> ## Documentation Index > Fetch the complete documentation index at: https://codluv.mintlify.site/llms.txt > Use this file to discover all available pages before exploring further. # core > core package overview ## Functions & Classes | Symbol | Kind | Description | | -------------------------------------------------------------------------------------------------------------- | -------- | -------------------------------------------------------------------------------------------------------------------- | | [`initLogger()`](/packages/core/api/index#initlogger) | function | Initialize the root logger. Call once at startup. Uses pino-roll for automat... | | [`getLogger()`](/packages/core/api/index#getlogger) | function | Get a child logger bound to a subsystem name. Safe to call before initLogger... | | [`getLogDir()`](/packages/core/api/index#getlogdir) | function | Get the current log directory path. Useful for read APIs that need to scan lo... | | [`closeLogger()`](/packages/core/api/index#closelogger) | function | Flush and close the logger. Call during graceful shutdown. Returns a Promise... | | [`getPlatformPaths()`](/packages/core/api/index#getplatformpaths) | function | Get OS-appropriate paths for CLEO's global directories. Cached after first ca... | | [`getSystemInfo()`](/packages/core/api/index#getsysteminfo) | function | Get a cached system information snapshot. Captured once and reused for the pr... | | [`_resetPlatformPathsCache()`](/packages/core/api/index#resetplatformpathscache) | function | Invalidate the path and system info caches. Use in tests after mutating CLEO\_... | | [`isProjectInitialized()`](/packages/core/api/index#isprojectinitialized) | function | Check if a CLEO project is initialized at the given root. Checks for tasks.db. | | [`getCleoHome()`](/packages/core/api/index#getcleohome) | function | Get the global CLEO home directory. Respects CLEO\_HOME env var; otherwise use... | | [`getCleoTemplatesDir()`](/packages/core/api/index#getcleotemplatesdir) | function | Get the global CLEO templates directory. | | [`getCleoSchemasDir()`](/packages/core/api/index#getcleoschemasdir) | function | Get the global CLEO schemas directory. | | [`getCleoDocsDir()`](/packages/core/api/index#getcleodocsdir) | function | Get the global CLEO docs directory. | | [`getCleoDir()`](/packages/core/api/index#getcleodir) | function | Get the project CLEO data directory (relative). Respects CLEO\_DIR env var, de... | | [`getCleoDirAbsolute()`](/packages/core/api/index#getcleodirabsolute) | function | Get the absolute path to the project CLEO directory. | | [`getProjectRoot()`](/packages/core/api/index#getprojectroot) | function | Get the project root from the CLEO directory. Respects CLEO\_ROOT env var, the... | | [`resolveProjectPath()`](/packages/core/api/index#resolveprojectpath) | function | Resolve a project-relative path to an absolute path. | | [`getTaskPath()`](/packages/core/api/index#gettaskpath) | function | Get the path to the project's tasks.db file (SQLite database). | | [`getConfigPath()`](/packages/core/api/index#getconfigpath) | function | Get the path to the project's config.json file. | | [`getSessionsPath()`](/packages/core/api/index#getsessionspath) | function | Get the path to the project's sessions.json file. | | [`getArchivePath()`](/packages/core/api/index#getarchivepath) | function | Get the path to the project's archive file. | | [`getLogPath()`](/packages/core/api/index#getlogpath) | function | Get the path to the project's log file. Canonical structured runtime log path... | | [`getBackupDir()`](/packages/core/api/index#getbackupdir) | function | Get the backup directory for operational backups. | | [`getGlobalConfigPath()`](/packages/core/api/index#getglobalconfigpath) | function | Get the global config file path. | | [`getCleoGlobalRecipesDir()`](/packages/core/api/index#getcleoglobalrecipesdir) | function | Get the Global Justfile Hub directory. The hub stores cross-project recipe l... | | [`getCleoGlobalJustfilePath()`](/packages/core/api/index#getcleoglobaljustfilepath) | function | Get the absolute path to the primary global justfile. | | [`getCleoPiExtensionsDir()`](/packages/core/api/index#getcleopiextensionsdir) | function | Get the Global Pi Extensions Hub directory. Houses the Pi extensions that dr... | | [`getCleoCantWorkflowsDir()`](/packages/core/api/index#getcleocantworkflowsdir) | function | Get the Global CANT Workflows Hub directory. Stores compiled and parsed... | | [`getCleoGlobalAgentsDir()`](/packages/core/api/index#getcleoglobalagentsdir) | function | Get the Global CLEO Agents directory. Holds globally-available CANT agent de... | | [`getAgentOutputsDir()`](/packages/core/api/index#getagentoutputsdir) | function | Get the agent outputs directory (relative path) from config or default. Conf... | | [`getAgentOutputsAbsolute()`](/packages/core/api/index#getagentoutputsabsolute) | function | Get the absolute path to the agent outputs directory. | | [`getManifestPath()`](/packages/core/api/index#getmanifestpath) | function | Get the absolute path to the legacy agent-outputs flat-file (deprecated per ADR-027). Checks config.agentOutputs... | | [`getManifestArchivePath()`](/packages/core/api/index#getmanifestarchivepath) | function | Get the absolute path to the MANIFEST.archive.jsonl file. | | [`isAbsolutePath()`](/packages/core/api/index#isabsolutepath) | function | Check if a path is absolute (POSIX or Windows). | | [`getCleoLogDir()`](/packages/core/api/index#getcleologdir) | function | Get the OS log directory for CLEO global logs. Linux: \~/.local/state/cleo \| m... | | [`getCleoCacheDir()`](/packages/core/api/index#getcleocachedir) | function | Get the OS cache directory for CLEO. Linux: \~/.cache/cleo \| macOS: \~/Library/... | | [`getCleoTempDir()`](/packages/core/api/index#getcleotempdir) | function | Get the OS temp directory for CLEO ephemeral files. | | [`getCleoConfigDir()`](/packages/core/api/index#getcleoconfigdir) | function | Get the OS config directory for CLEO. Linux: \~/.config/cleo \| macOS: \~/Librar... | | [`getCleoTemplatesTildePath()`](/packages/core/api/index#getcleotemplatestildepath) | function | Get the CLEO templates directory as a tilde-prefixed path for use in `@` refe... | | [`getAgentsHome()`](/packages/core/api/index#getagentshome) | function | Get the global agents hub directory. Respects AGENTS\_HOME env var, defaults t... | | [`getClaudeAgentsDir()`](/packages/core/api/index#getclaudeagentsdir) | function | Get the Claude Code agents directory (\~/.claude/agents by default). | | [`getClaudeMemDbPath()`](/packages/core/api/index#getclaudememdbpath) | function | Get the claude-mem SQLite database path. | | [`tableExists()`](/packages/core/api/index#tableexists) | function | Check whether a table exists in a SQLite database. | | [`isSqliteBusy()`](/packages/core/api/index#issqlitebusy) | function | Check if an error is a SQLite BUSY error (database locked by another process)... | | [`createSafetyBackup()`](/packages/core/api/index#createsafetybackup) | function | Create a pre-migration safety backup of the database file. Only creates the... | | [`reconcileJournal()`](/packages/core/api/index#reconcilejournal) | function | Bootstrap and reconcile the Drizzle migration journal. Handles three scenari... | | [`migrateWithRetry()`](/packages/core/api/index#migratewithretry) | function | | | [`ensureColumns()`](/packages/core/api/index#ensurecolumns) | function | Ensure all required columns exist on a table. Uses PRAGMA table\_info to insp... | | [`vacuumIntoBackup()`](/packages/core/api/index#vacuumintobackup) | function | Create a VACUUM INTO snapshot of the SQLite database. Debounced by default (... | | [`listSqliteBackups()`](/packages/core/api/index#listsqlitebackups) | function | List existing SQLite backup snapshots, newest first. | | [`getBrainDbPath()`](/packages/core/api/index#getbraindbpath) | function | Get the path to the brain.db SQLite database file. | | [`resolveBrainMigrationsFolder()`](/packages/core/api/index#resolvebrainmigrationsfolder) | function | Resolve the path to the drizzle-brain migrations folder. Works from both src/... | | [`isBrainVecLoaded()`](/packages/core/api/index#isbrainvecloaded) | function | Check whether the sqlite-vec extension is loaded for the current brain.db. | | [`getBrainDb()`](/packages/core/api/index#getbraindb) | function | Initialize the brain.db SQLite database (lazy, singleton). Creates the databa... | | [`closeBrainDb()`](/packages/core/api/index#closebraindb) | function | Close the brain.db database connection and release resources. | | [`resetBrainDbState()`](/packages/core/api/index#resetbraindbstate) | function | Reset brain.db singleton state without saving. Used during tests or when data... | | [`getBrainNativeDb()`](/packages/core/api/index#getbrainnativedb) | function | Get the underlying node:sqlite DatabaseSync instance for brain.db. Useful for... | | [`getNexusDbPath()`](/packages/core/api/index#getnexusdbpath) | function | Get the path to the nexus.db SQLite database file. nexus.db lives in the glob... | | [`resolveNexusMigrationsFolder()`](/packages/core/api/index#resolvenexusmigrationsfolder) | function | Resolve the path to the drizzle-nexus migrations folder. Works from both src/... | | [`getNexusDb()`](/packages/core/api/index#getnexusdb) | function | Initialize the nexus.db SQLite database (lazy, singleton). Creates the databa... | | [`closeNexusDb()`](/packages/core/api/index#closenexusdb) | function | Close the nexus.db database connection and release resources. | | [`resetNexusDbState()`](/packages/core/api/index#resetnexusdbstate) | function | Reset nexus.db singleton state without saving. Used during tests or when data... | | [`getNexusNativeDb()`](/packages/core/api/index#getnexusnativedb) | function | Get the underlying node:sqlite DatabaseSync instance for nexus.db. Useful for... | | [`openNativeDatabase()`](/packages/core/api/index#opennativedatabase) | function | Open a node:sqlite DatabaseSync with CLEO standard pragmas. CRITICAL: WAL mo... | | [`getDbPath()`](/packages/core/api/index#getdbpath) | function | Get the path to the SQLite database file. | | [`getDb()`](/packages/core/api/index#getdb) | function | Initialize the SQLite database (lazy, singleton). Creates the database file a... | | [`resolveMigrationsFolder()`](/packages/core/api/index#resolvemigrationsfolder) | function | Resolve the path to the drizzle migrations folder. Works from both src/ (dev... | | [`closeDb()`](/packages/core/api/index#closedb) | function | Close the database connection and release resources. | | [`resetDbState()`](/packages/core/api/index#resetdbstate) | function | Reset database singleton state without saving. Used during migrations when da... | | [`getSchemaVersion()`](/packages/core/api/index#getschemaversion) | function | Get the schema version from the database. | | [`dbExists()`](/packages/core/api/index#dbexists) | function | Check if the database file exists. | | [`getNativeDb()`](/packages/core/api/index#getnativedb) | function | Get the underlying node:sqlite DatabaseSync instance. Useful for direct PRAGM... | | [`getNativeTasksDb()`](/packages/core/api/index#getnativetasksdb) | function | Get the underlying node:sqlite DatabaseSync instance for tasks.db. Alias for... | | [`closeAllDatabases()`](/packages/core/api/index#closealldatabases) | function | Close ALL database singletons (tasks.db, brain.db, nexus.db). Must be called... | | [`safeParseJson()`](/packages/core/api/index#safeparsejson) | function | Parse a JSON string, returning undefined on null/undefined input or parse error. | | [`safeParseJsonArray()`](/packages/core/api/index#safeparsejsonarray) | function | Parse a JSON string expected to contain an array. Returns undefined for null/... | | [`rowToTask()`](/packages/core/api/index#rowtotask) | function | Convert a database TaskRow to a domain Task object. | | [`taskToRow()`](/packages/core/api/index#tasktorow) | function | Convert a domain Task to a database row for insert/upsert. | | [`archivedTaskToRow()`](/packages/core/api/index#archivedtasktorow) | function | Convert a domain Task to a row suitable for archived tasks. | | [`rowToSession()`](/packages/core/api/index#rowtosession) | function | Convert a SessionRow to a domain Session. | | [`getSignaldockDbPath()`](/packages/core/api/index#getsignaldockdbpath) | function | Get the path to the signaldock.db SQLite database file. | | [`ensureSignaldockDb()`](/packages/core/api/index#ensuresignaldockdb) | function | Ensure signaldock.db exists and has the full schema applied. Idempotent — sa... | | [`checkSignaldockDbHealth()`](/packages/core/api/index#checksignaldockdbhealth) | function | Check signaldock.db health — table count, WAL mode, schema version. Used by... | | [`cleanupBrainRefsOnTaskDelete()`](/packages/core/api/index#cleanupbrainrefsontaskdelete) | function | Clean up brain.db references after a task is deleted from tasks.db. Handles:... | | [`cleanupBrainRefsOnSessionDelete()`](/packages/core/api/index#cleanupbrainrefsonsessiondelete) | function | Clean up brain.db references after a session is deleted from tasks.db. Handl... | | [`taskExistsInTasksDb()`](/packages/core/api/index#taskexistsintasksdb) | function | Verify a task ID exists in tasks.db before writing a cross-DB reference to br... | | [`reconcileOrphanedRefs()`](/packages/core/api/index#reconcileorphanedrefs) | function | Reconcile orphaned cross-DB references in brain.db. Scans brain.db for refer... | | [`sessionExistsInTasksDb()`](/packages/core/api/index#sessionexistsintasksdb) | function | | | [`agentExistsInSignaldockDb()`](/packages/core/api/index#agentexistsinsignaldockdb) | function | Verify an agent exists in signaldock.db before creating cross-DB references.... | | [`getErrorDefinition()`](/packages/core/api/index#geterrordefinition) | function | Look up an error definition by exit code. | | [`getErrorDefinitionByLafsCode()`](/packages/core/api/index#geterrordefinitionbylafscode) | function | Look up an error definition by LAFS string code. | | [`getAllErrorDefinitions()`](/packages/core/api/index#getallerrordefinitions) | function | Get all error definitions as an array. | | [`CleoError`](/packages/core/api/index#cleoerror) | class | Structured error class for CLEO operations. Carries an exit code, human-reada... | | [`upsertTask()`](/packages/core/api/index#upserttask) | function | Upsert a single task row into the tasks table. Handles both active task upser... | | [`upsertSession()`](/packages/core/api/index#upsertsession) | function | Upsert a single session row into the sessions table. | | [`updateDependencies()`](/packages/core/api/index#updatedependencies) | function | Update dependencies for a task: delete existing, then re-insert. Optionally f... | | [`batchUpdateDependencies()`](/packages/core/api/index#batchupdatedependencies) | function | Batch-update dependencies for multiple tasks in two bulk SQL operations. Repl... | | [`loadDependenciesForTasks()`](/packages/core/api/index#loaddependenciesfortasks) | function | Batch-load dependencies for a list of tasks and apply them in-place. Uses inA... | | [`loadRelationsForTasks()`](/packages/core/api/index#loadrelationsfortasks) | function | Batch-load relations for a list of tasks and apply them in-place. Mirrors loa... | | [`generateAgentId()`](/packages/core/api/index#generateagentid) | function | Generate a unique agent instance ID. Format: `agt_{YYYYMMDDHHmmss}_{6hex}` | | [`registerAgent()`](/packages/core/api/index#registeragent) | function | Register a new agent instance in the database. Sets initial status to 'starti... | | [`deregisterAgent()`](/packages/core/api/index#deregisteragent) | function | Deregister (stop) an agent instance. Sets status to 'stopped' and records the... | | [`heartbeat()`](/packages/core/api/index#heartbeat) | function | Record a heartbeat for an agent instance. Updates `last_heartbeat` and return... | | [`updateAgentStatus()`](/packages/core/api/index#updateagentstatus) | function | Update agent status with optional error tracking. When status is 'error' or '... | | [`incrementTasksCompleted()`](/packages/core/api/index#incrementtaskscompleted) | function | Increment the completed task count for an agent. | | [`listAgentInstances()`](/packages/core/api/index#listagentinstances) | function | List agent instances with optional filters. | | [`getAgentInstance()`](/packages/core/api/index#getagentinstance) | function | Get a single agent instance by ID. | | [`classifyError()`](/packages/core/api/index#classifyerror) | function | Classify an error as retriable, permanent, or unknown. Retriable errors are... | | [`getAgentErrorHistory()`](/packages/core/api/index#getagenterrorhistory) | function | Get the error history for a specific agent. | | [`checkAgentHealth()`](/packages/core/api/index#checkagenthealth) | function | Check agent health by finding instances whose last heartbeat exceeds the thre... | | [`markCrashed()`](/packages/core/api/index#markcrashed) | function | Mark an agent instance as crashed. Increments error count and sets status to... | | [`getHealthReport()`](/packages/core/api/index#gethealthreport) | function | Generate a health report summarizing all agent instances. Includes counts by... | | [`setMetaValue()`](/packages/core/api/index#setmetavalue) | function | Write a JSON blob to the schema\_meta table by key. | | [`createSqliteDataAccessor()`](/packages/core/api/index#createsqlitedataaccessor) | function | Create a SQLite-backed DataAccessor. Opens (or creates) the SQLite database... | | [`atomicWrite()`](/packages/core/api/index#atomicwrite) | function | Write data to a file atomically. Creates parent directories if they don't exi... | | [`safeReadFile()`](/packages/core/api/index#safereadfile) | function | Read a file and return its contents. Returns null if the file does not exist. | | [`atomicWriteJson()`](/packages/core/api/index#atomicwritejson) | function | Write JSON data atomically with consistent formatting. | | [`atomicDatabaseMigration()`](/packages/core/api/index#atomicdatabasemigration) | function | Perform atomic database migration using rename operations. Pattern: 1. Wri... | | [`restoreDatabaseFromBackup()`](/packages/core/api/index#restoredatabasefrombackup) | function | Restore database from backup after failed migration. | | [`cleanupMigrationArtifacts()`](/packages/core/api/index#cleanupmigrationartifacts) | function | Clean up migration artifacts after successful migration. | | [`validateSqliteDatabase()`](/packages/core/api/index#validatesqlitedatabase) | function | Validate SQLite database integrity by attempting to open it. | | [`createBackup()`](/packages/core/api/index#createbackup) | function | Create a numbered backup of a file. Rotates existing backups (file.1 - file.2... | | [`listBackups()`](/packages/core/api/index#listbackups) | function | List existing backups for a file, sorted by number (newest first). | | [`restoreFromBackup()`](/packages/core/api/index#restorefrombackup) | function | Restore a file from its most recent backup. Returns the path of the backup th... | | [`acquireLock()`](/packages/core/api/index#acquirelock) | function | Acquire an exclusive lock on a file. Returns a release function that must be... | | [`isLocked()`](/packages/core/api/index#islocked) | function | Check if a file is currently locked. | | [`withLock()`](/packages/core/api/index#withlock) | function | Execute a function while holding an exclusive lock on a file. The lock is aut... | | [`isProviderHookEvent()`](/packages/core/api/index#isproviderhookevent) | function | Type guard for CAAMP/provider-discoverable canonical hook events. | | [`isInternalHookEvent()`](/packages/core/api/index#isinternalhookevent) | function | Type guard for CLEO-local coordination hook events. | | [`HookRegistry`](/packages/core/api/index#hookregistry) | class | Central registry for hook handlers. Manages registration, priority-based ord... | | [`readJson()`](/packages/core/api/index#readjson) | function | Read and parse a JSON file. Returns null if the file does not exist. | | [`readJsonRequired()`](/packages/core/api/index#readjsonrequired) | function | Read a JSON file, throwing if it doesn't exist. | | [`computeChecksum()`](/packages/core/api/index#computechecksum) | function | Compute a truncated SHA-256 checksum of a value. Used for integrity verificat... | | [`saveJson()`](/packages/core/api/index#savejson) | function | Save JSON data with optional locking, backup, and validation. Follows the CLE... | | [`appendJsonl()`](/packages/core/api/index#appendjsonl) | function | Append a line to a JSONL file atomically. Used for manifest entries and audit... | | [`readLogEntries()`](/packages/core/api/index#readlogentries) | function | Read log entries from a hybrid JSON/JSONL file. Handles three formats: 1. P... | | [`makeCleoGitEnv()`](/packages/core/api/index#makecleogitenv) | function | Build environment variables that point git at the isolated .cleo/.git repo.... | | [`cleoGitCommand()`](/packages/core/api/index#cleogitcommand) | function | Run a git command against the isolated .cleo/.git repo, suppressing errors.... | | [`isCleoGitInitialized()`](/packages/core/api/index#iscleogitinitialized) | function | Check whether the isolated .cleo/.git repo has been initialized. T4872 | | [`loadStateFileAllowlist()`](/packages/core/api/index#loadstatefileallowlist) | function | Load additional state file paths from config.json... | | [`loadCheckpointConfig()`](/packages/core/api/index#loadcheckpointconfig) | function | Load checkpoint configuration from config.json. T4552 | | [`shouldCheckpoint()`](/packages/core/api/index#shouldcheckpoint) | function | Check whether a checkpoint should be performed. Evaluates: enabled, .cleo/.gi... | | [`gitCheckpoint()`](/packages/core/api/index#gitcheckpoint) | function | Stage .cleo/ state files and commit to the isolated .cleo/.git repo. Never fa... | | [`gitCheckpointStatus()`](/packages/core/api/index#gitcheckpointstatus) | function | Show checkpoint configuration and status. T4552 T4872 | | [`gitCheckpointDryRun()`](/packages/core/api/index#gitcheckpointdryrun) | function | Show what files would be committed (dry-run). T4552 T4872 | | [`DataSafetyError`](/packages/core/api/index#datasafetyerror) | class | Safety violation error | | [`getSafetyStats()`](/packages/core/api/index#getsafetystats) | function | Get current safety statistics | | [`resetSafetyStats()`](/packages/core/api/index#resetsafetystats) | function | Reset safety statistics (for testing) | | [`safeSaveSessions()`](/packages/core/api/index#safesavesessions) | function | Safe wrapper for DataAccessor.saveSessions() | | [`safeSaveArchive()`](/packages/core/api/index#safesavearchive) | function | Safe wrapper for DataAccessor.saveArchive() | | [`safeSingleTaskWrite()`](/packages/core/api/index#safesingletaskwrite) | function | Safe wrapper for single-task write operations (T5034). Performs: 1. Sequence... | | [`safeAppendLog()`](/packages/core/api/index#safeappendlog) | function | Safe wrapper for DataAccessor.appendLog() Note: Log appends are fire-and-for... | | [`runDataIntegrityCheck()`](/packages/core/api/index#rundataintegritycheck) | function | Run comprehensive data integrity check. Validates all data files and sequence... | | [`forceSafetyCheckpoint()`](/packages/core/api/index#forcesafetycheckpoint) | function | Force immediate checkpoint. Use before destructive operations. | | [`disableSafety()`](/packages/core/api/index#disablesafety) | function | Disable all safety for current process. DANGEROUS - only use for recovery ope... | | [`enableSafety()`](/packages/core/api/index#enablesafety) | function | Re-enable safety after being disabled. | | [`SafetyDataAccessor`](/packages/core/api/index#safetydataaccessor) | class | Safety-enabled DataAccessor wrapper. Wraps any DataAccessor implementation a... | | [`wrapWithSafety()`](/packages/core/api/index#wrapwithsafety) | function | Wrap a DataAccessor with safety. This is the internal factory helper that wr... | | [`isSafetyEnabled()`](/packages/core/api/index#issafetyenabled) | function | Check if safety is currently enabled. | | [`getSafetyStatus()`](/packages/core/api/index#getsafetystatus) | function | Get safety status information. | | [`createDataAccessor()`](/packages/core/api/index#createdataaccessor) | function | Create a DataAccessor for the given working directory. Always creates a SQLit... | | [`getAccessor()`](/packages/core/api/index#getaccessor) | function | Convenience: get a DataAccessor with auto-detected engine. | | [`showSequence()`](/packages/core/api/index#showsequence) | function | Show current sequence state. | | [`checkSequence()`](/packages/core/api/index#checksequence) | function | Check sequence integrity. | | [`repairSequence()`](/packages/core/api/index#repairsequence) | function | Repair sequence if behind. | | [`allocateNextTaskId()`](/packages/core/api/index#allocatenexttaskid) | function | Atomically allocate the next task ID via SQLite. Uses BEGIN IMMEDIATE to gua... | | [`SafetyError`](/packages/core/api/index#safetyerror) | class | Safety violation error. | | [`checkTaskExists()`](/packages/core/api/index#checktaskexists) | function | Check if a task ID already exists (collision detection). | | [`verifyTaskWrite()`](/packages/core/api/index#verifytaskwrite) | function | Verify a task was actually written to the database. | | [`validateAndRepairSequence()`](/packages/core/api/index#validateandrepairsequence) | function | Validate and repair sequence if necessary. | | [`triggerCheckpoint()`](/packages/core/api/index#triggercheckpoint) | function | Trigger auto-checkpoint after successful write. | | [`safeCreateTask()`](/packages/core/api/index#safecreatetask) | function | Safely create a task with all safety mechanisms. Wraps the actual createTask... | | [`safeUpdateTask()`](/packages/core/api/index#safeupdatetask) | function | Safely update a task with all safety mechanisms. | | [`safeDeleteTask()`](/packages/core/api/index#safedeletetask) | function | Safely delete a task with all safety mechanisms. | | [`verifySessionWrite()`](/packages/core/api/index#verifysessionwrite) | function | Verify session write. | | [`safeCreateSession()`](/packages/core/api/index#safecreatesession) | function | Safely create a session with all safety mechanisms. | | [`forceCheckpointBeforeOperation()`](/packages/core/api/index#forcecheckpointbeforeoperation) | function | Force a checkpoint before destructive operations. Use this before migrations,... | | [`runDataIntegrityCheck()`](/packages/core/api/index#rundataintegritycheck) | function | Run comprehensive data integrity check. Reports all issues found. | | [`getTask()`](/packages/core/api/index#gettask) | function | Get a task by ID, including its dependencies. | | [`updateTask()`](/packages/core/api/index#updatetask) | function | Update an existing task. | | [`deleteTask()`](/packages/core/api/index#deletetask) | function | Delete a task by ID. | | [`listTasks()`](/packages/core/api/index#listtasks) | function | List tasks with optional filters. | | [`findTasks()`](/packages/core/api/index#findtasks) | function | Find tasks by fuzzy text search. | | [`archiveTask()`](/packages/core/api/index#archivetask) | function | Archive a task (sets status to 'archived' with metadata). | | [`addDependency()`](/packages/core/api/index#adddependency) | function | Add a dependency between tasks. | | [`removeDependency()`](/packages/core/api/index#removedependency) | function | Remove a dependency. | | [`addRelation()`](/packages/core/api/index#addrelation) | function | Add a relation between tasks. | | [`getRelations()`](/packages/core/api/index#getrelations) | function | Get relations for a task. | | [`getBlockerChain()`](/packages/core/api/index#getblockerchain) | function | Get the dependency chain (blockers) for a task using recursive CTE. | | [`getChildren()`](/packages/core/api/index#getchildren) | function | Get children of a task (hierarchy). | | [`getSubtree()`](/packages/core/api/index#getsubtree) | function | Build a tree from a root task using recursive CTE. | | [`countByStatus()`](/packages/core/api/index#countbystatus) | function | Count tasks by status. | | [`countTasks()`](/packages/core/api/index#counttasks) | function | Get total task count (excluding archived). | | [`createTask()`](/packages/core/api/index#createtask) | function | Create a task with full safety protections. Includes: collision detection, wr... | | [`updateTaskSafe()`](/packages/core/api/index#updatetasksafe) | function | Update a task with full safety protections. Includes: write verification, aut... | | [`deleteTaskSafe()`](/packages/core/api/index#deletetasksafe) | function | Delete a task with full safety protections. Includes: delete verification, au... | | [`taskShowNext()`](/packages/core/api/index#taskshownext) | function | Build `_next` directives for a full task detail result (tasks.show). | | [`taskListItemNext()`](/packages/core/api/index#tasklistitemnext) | function | Build `_next` directives for a task in a list or find result. | | [`sessionListItemNext()`](/packages/core/api/index#sessionlistitemnext) | function | Build `_next` directives for a session in a list or find result. | | [`sessionStartNext()`](/packages/core/api/index#sessionstartnext) | function | Build `_next` directives for a session start result. | | [`memoryFindHitNext()`](/packages/core/api/index#memoryfindhitnext) | function | Build `_next` directives for a memory search (find) hit. | | [`showTask()`](/packages/core/api/index#showtask) | function | Get a task by ID with enriched details. Checks active tasks first, then archi... | | [`createPage()`](/packages/core/api/index#createpage) | function | Create an LAFSPage object from pagination parameters. Returns mode:"none" wh... | | [`paginate()`](/packages/core/api/index#paginate) | function | Apply pagination to an array of items and return the sliced result with page... | | [`toCompact()`](/packages/core/api/index#tocompact) | function | Convert a full Task to compact representation with \_next directives. | | [`listTasks()`](/packages/core/api/index#listtasks) | function | List tasks with optional filtering and pagination. T4460 | | [`fuzzyScore()`](/packages/core/api/index#fuzzyscore) | function | Calculate fuzzy match score between query and text. Higher score = better mat... | | [`findTasks()`](/packages/core/api/index#findtasks) | function | Search tasks by fuzzy matching, ID prefix, or exact title. Returns minimal fi... | | [`extractAdrId()`](/packages/core/api/index#extractadrid) | function | Extract ADR ID from filename (e.g., 'ADR-007-domain-consolidation.md' - 'ADR-... | | [`parseFrontmatter()`](/packages/core/api/index#parsefrontmatter) | function | Parse bold-key frontmatter pattern: **Key**: value | | [`extractTitle()`](/packages/core/api/index#extracttitle) | function | Extract H1 title from markdown | | [`parseAdrFile()`](/packages/core/api/index#parseadrfile) | function | Parse a single ADR markdown file into an AdrRecord | | [`linkPipelineAdr()`](/packages/core/api/index#linkpipelineadr) | function | Link ADRs to a pipeline task when the architecture\_decision stage completes. | | [`syncAdrsToDb()`](/packages/core/api/index#syncadrstodb) | function | Sync all ADR markdown files into the architecture\_decisions table AND regener... | | [`recordEvidence()`](/packages/core/api/index#recordevidence) | function | Record an evidence artifact linked to a lifecycle stage. Writes to the SQLit... | | [`getEvidence()`](/packages/core/api/index#getevidence) | function | Query evidence records for an epic, optionally filtered by stage. | | [`linkProvenance()`](/packages/core/api/index#linkprovenance) | function | Convenience wrapper to record a file as provenance evidence. Converts the fi... | | [`getEvidenceSummary()`](/packages/core/api/index#getevidencesummary) | function | Aggregate evidence counts per stage for an epic. | | [`normalizeEpicId()`](/packages/core/api/index#normalizeepicid) | function | Strip suffixes from epic directory names. E.g. `T4881_install-channels` -... | | [`getRcasdBaseDir()`](/packages/core/api/index#getrcasdbasedir) | function | Get the absolute path to the `.cleo/rcasd/` base directory. | | [`getEpicDir()`](/packages/core/api/index#getepicdir) | function | Get the absolute path to `.cleo/rcasd/{epicId}/`. Uses the normalized epic ID... | | [`findEpicDir()`](/packages/core/api/index#findepicdir) | function | Search both `rcasd/` and legacy `rcsd/` for an existing epic directory. Also... | | [`getStagePath()`](/packages/core/api/index#getstagepath) | function | Get the stage subdirectory path for an epic. Uses STAGE\_SUBDIRS mapping, fall... | | [`ensureStagePath()`](/packages/core/api/index#ensurestagepath) | function | Get the stage subdirectory path, creating it if it does not exist. | | [`getManifestPath()`](/packages/core/api/index#getmanifestpath) | function | Get the manifest path for an epic under the default rcasd directory. | | [`findManifestPath()`](/packages/core/api/index#findmanifestpath) | function | Search both `rcasd/` and `rcsd/` for an existing manifest file. Checks suffix... | | [`getLooseResearchFiles()`](/packages/core/api/index#getlooseresearchfiles) | function | Scan the rcasd root directory for loose `T####_*.md` files that are not insid... | | [`listEpicDirs()`](/packages/core/api/index#listepicdirs) | function | List all epic directories across `rcasd/` and `rcsd/`. | | [`parseFrontmatter()`](/packages/core/api/index#parsefrontmatter) | function | Parse YAML frontmatter from a markdown string. Finds the YAML block delimite... | | [`serializeFrontmatter()`](/packages/core/api/index#serializefrontmatter) | function | Convert a FrontmatterMetadata object to a YAML frontmatter string. Output fo... | | [`addFrontmatter()`](/packages/core/api/index#addfrontmatter) | function | Add or replace YAML frontmatter in markdown content. If the content already... | | [`buildFrontmatter()`](/packages/core/api/index#buildfrontmatter) | function | Convenience builder for common frontmatter patterns. Auto-sets `updated` to... | | [`getBacklinks()`](/packages/core/api/index#getbacklinks) | function | Scan all markdown files in `.cleo/rcasd/` for files that reference the given... | | [`getStageOrder()`](/packages/core/api/index#getstageorder) | function | Get the order/index of a stage (1-based). | | [`isStageBefore()`](/packages/core/api/index#isstagebefore) | function | Check if stage A comes before stage B in the pipeline. | | [`isStageAfter()`](/packages/core/api/index#isstageafter) | function | Check if stage A comes after stage B in the pipeline. | | [`getNextStage()`](/packages/core/api/index#getnextstage) | function | Get the next stage in the pipeline. | | [`getPreviousStage()`](/packages/core/api/index#getpreviousstage) | function | Get the previous stage in the pipeline. | | [`getStagesBetween()`](/packages/core/api/index#getstagesbetween) | function | Get all stages between two stages (inclusive). | | [`getPrerequisites()`](/packages/core/api/index#getprerequisites) | function | Get prerequisites for a stage. | | [`isPrerequisite()`](/packages/core/api/index#isprerequisite) | function | Check if one stage is a prerequisite of another. | | [`getDependents()`](/packages/core/api/index#getdependents) | function | Get all stages that depend on a given stage. | | [`isValidStage()`](/packages/core/api/index#isvalidstage) | function | Check if a stage name is valid. | | [`validateStage()`](/packages/core/api/index#validatestage) | function | Validate a stage name and throw if invalid. | | [`isValidStageStatus()`](/packages/core/api/index#isvalidstagestatus) | function | Check if a stage status is valid. | | [`getStagesByCategory()`](/packages/core/api/index#getstagesbycategory) | function | Get stages by category. | | [`getSkippableStages()`](/packages/core/api/index#getskippablestages) | function | Get skippable stages. | | [`checkTransition()`](/packages/core/api/index#checktransition) | function | Check if a transition is allowed. | | [`ensureStageArtifact()`](/packages/core/api/index#ensurestageartifact) | function | Ensure stage artifact exists and frontmatter/backlinks are up to date. | | [`getSkillSearchPaths()`](/packages/core/api/index#getskillsearchpaths) | function | Build the CAAMP skill search paths in priority order. Uses CAAMP's canonical... | | [`getSkillsDir()`](/packages/core/api/index#getskillsdir) | function | Get the primary skills directory (app-embedded). T4516 | | [`getSharedDir()`](/packages/core/api/index#getshareddir) | function | Get the shared skills resources directory. T4516 | | [`mapSkillName()`](/packages/core/api/index#mapskillname) | function | Map a user-friendly skill name to the canonical ct-prefixed directory name. S... | | [`listCanonicalSkillNames()`](/packages/core/api/index#listcanonicalskillnames) | function | List all known canonical skill names (unique values from the map). T4516 | | [`parseFrontmatter()`](/packages/core/api/index#parsefrontmatter) | function | Parse YAML-like frontmatter from a SKILL.md file. Handles the --- delimited h... | | [`discoverSkill()`](/packages/core/api/index#discoverskill) | function | Discover a single skill from a directory. Tries CAAMP's parseSkillFile first,... | | [`discoverSkillsInDir()`](/packages/core/api/index#discoverskillsindir) | function | Discover all skills in a single directory. Scans for subdirectories containin... | | [`discoverAllSkills()`](/packages/core/api/index#discoverallskills) | function | Discover all skills across CAAMP search paths. Returns skills in priority ord... | | [`findSkill()`](/packages/core/api/index#findskill) | function | Find a specific skill by name across all search paths. T4516 | | [`toSkillSummary()`](/packages/core/api/index#toskillsummary) | function | Convert a Skill to a lightweight SkillSummary. T4516 | | [`generateManifest()`](/packages/core/api/index#generatemanifest) | function | Generate a skill manifest from discovered skills. T4516 | | [`resolveTemplatePath()`](/packages/core/api/index#resolvetemplatepath) | function | Resolve a skill template path (SKILL.md) by name. T4516 | | [`loadPlaceholders()`](/packages/core/api/index#loadplaceholders) | function | Load token definitions from placeholders.json. T4521 | | [`buildDefaults()`](/packages/core/api/index#builddefaults) | function | Build the full default values map (merging placeholders.json with hardcoded d... | | [`validateTokenValue()`](/packages/core/api/index#validatetokenvalue) | function | Validate a single token value against its pattern. T4521 | | [`validateRequired()`](/packages/core/api/index#validaterequired) | function | Validate all required tokens are present and valid. T4521 | | [`validateAllTokens()`](/packages/core/api/index#validatealltokens) | function | Validate all tokens in a values map (required + optional). T4521 | | [`injectTokens()`](/packages/core/api/index#injecttokens) | function | Inject token values into a template string. Replaces all TOKEN\_NAME patterns... | | [`hasUnresolvedTokens()`](/packages/core/api/index#hasunresolvedtokens) | function | Check if a template has unresolved tokens after injection. T4521 | | [`loadAndInject()`](/packages/core/api/index#loadandinject) | function | Load a skill template and inject tokens. T4521 | | [`setFullContext()`](/packages/core/api/index#setfullcontext) | function | Build a complete TokenValues map from a task, resolving all standard tokens.... | | [`autoDispatch()`](/packages/core/api/index#autodispatch) | function | Auto-dispatch a task to the most appropriate skill. Tries strategies in prior... | | [`dispatchExplicit()`](/packages/core/api/index#dispatchexplicit) | function | Dispatch with explicit skill override. Verifies the skill exists before retur... | | [`getProtocolForDispatch()`](/packages/core/api/index#getprotocolfordispatch) | function | Get the protocol type for a dispatch result. T4517 | | [`prepareSpawnContext()`](/packages/core/api/index#preparespawncontext) | function | Prepare spawn context for a dispatched skill. Returns the skill name and prot... | | [`prepareSpawnMulti()`](/packages/core/api/index#preparespawnmulti) | function | Compose multiple skills into a single prompt with progressive disclosure. Por... | | [`buildStageGuidance()`](/packages/core/api/index#buildstageguidance) | function | Build structured stage guidance for a given pipeline stage. Resolves the pri... | | [`formatStageGuidance()`](/packages/core/api/index#formatstageguidance) | function | Format stage guidance as a Markdown-wrapped system prompt. Since... | | [`renderStageGuidance()`](/packages/core/api/index#renderstageguidance) | function | Convenience wrapper: build AND format in a single call. | | [`getLifecycleState()`](/packages/core/api/index#getlifecyclestate) | function | Get the current lifecycle state for an epic. T4467 | | [`startStage()`](/packages/core/api/index#startstage) | function | Start a lifecycle stage. T4467 | | [`completeStage()`](/packages/core/api/index#completestage) | function | Complete a lifecycle stage. T4467 | | [`skipStage()`](/packages/core/api/index#skipstage) | function | Skip a lifecycle stage. T4467 | | [`checkGate()`](/packages/core/api/index#checkgate) | function | Check lifecycle gate before starting a stage. T4467 | | [`getLifecycleStatus()`](/packages/core/api/index#getlifecyclestatus) | function | Get lifecycle status for an epic from SQLite. Returns stage progress, current... | | [`getLifecycleHistory()`](/packages/core/api/index#getlifecyclehistory) | function | Get lifecycle history for an epic. Returns stage transitions and gate events... | | [`getLifecycleGates()`](/packages/core/api/index#getlifecyclegates) | function | Get all gate statuses for an epic. T4785 | | [`getStagePrerequisites()`](/packages/core/api/index#getstageprerequisites) | function | Get prerequisites for a target stage. Pure data function, no I/O. T4785 | | [`checkStagePrerequisites()`](/packages/core/api/index#checkstageprerequisites) | function | Check if a stage's prerequisites are met for an epic. T4785 | | [`recordStageProgress()`](/packages/core/api/index#recordstageprogress) | function | Record a stage status transition (progress/record). SQLite-native implementat... | | [`skipStageWithReason()`](/packages/core/api/index#skipstagewithreason) | function | Skip a stage with a reason (engine-compatible). T4785 | | [`resetStage()`](/packages/core/api/index#resetstage) | function | Reset a stage to pending (emergency). T4785 | | [`passGate()`](/packages/core/api/index#passgate) | function | Mark a gate as passed. SQLite-native implementation - T4801 T4785 T4801 | | [`failGate()`](/packages/core/api/index#failgate) | function | Mark a gate as failed. SQLite-native implementation - T4801 T4785 T4801 | | [`listEpicsWithLifecycle()`](/packages/core/api/index#listepicswithlifecycle) | function | List all epic IDs that have lifecycle data. T4785 | | [`getCurrentSessionId()`](/packages/core/api/index#getcurrentsessionid) | function | Get the current session ID. | | [`getContextStatePath()`](/packages/core/api/index#getcontextstatepath) | function | Get context state file path for a session. | | [`readContextState()`](/packages/core/api/index#readcontextstate) | function | Read context state for a session. Returns null if stale or missing. | | [`getThresholdLevel()`](/packages/core/api/index#getthresholdlevel) | function | Determine the threshold level for a given percentage. | | [`shouldAlert()`](/packages/core/api/index#shouldalert) | function | Determine if we should alert based on threshold crossing. Returns the alert l... | | [`getRecommendedAction()`](/packages/core/api/index#getrecommendedaction) | function | Get recommended action for an alert level. | | [`checkContextAlert()`](/packages/core/api/index#checkcontextalert) | function | Main function to check and determine if an alert should fire. Non-blocking -... | | [`pushWarning()`](/packages/core/api/index#pushwarning) | function | Push a deprecation or informational warning into the current envelope. Warnin... | | [`formatSuccess()`](/packages/core/api/index#formatsuccess) | function | Format a successful result as a full LAFS-conformant envelope. Always produc... | | [`formatError()`](/packages/core/api/index#formaterror) | function | Format an error as a full LAFS-conformant envelope. Always produces the full... | | [`formatOutput()`](/packages/core/api/index#formatoutput) | function | Format any result (success or error) as LAFS JSON. | | [`getRegistryEntry()`](/packages/core/api/index#getregistryentry) | function | Look up a registry entry by CLEO exit code. T4671 T4663 | | [`getRegistryEntryByLafsCode()`](/packages/core/api/index#getregistryentrybylafscode) | function | Look up a registry entry by LAFS string code. T4671 T4663 | | [`getCleoErrorRegistry()`](/packages/core/api/index#getcleoerrorregistry) | function | Get the full CLEO error registry for conformance testing. T4671 T4663 | | [`isCleoRegisteredCode()`](/packages/core/api/index#iscleoregisteredcode) | function | Check if a LAFS code is registered in the CLEO error registry. T4671 T4663 | | [`createTestDb()`](/packages/core/api/index#createtestdb) | function | Create a temporary directory with an initialized tasks.db. Usage: | | [`makeTasks()`](/packages/core/api/index#maketasks) | function | Build full Task objects from a list of task partials. Useful for seeding test... | | [`seedTasks()`](/packages/core/api/index#seedtasks) | function | Seed tasks into the test database via the accessor. Uses a two-pass approach... | | [`getChildren()`](/packages/core/api/index#getchildren) | function | Get direct children of a task. | | [`getChildIds()`](/packages/core/api/index#getchildids) | function | Get direct child IDs. | | [`getDescendants()`](/packages/core/api/index#getdescendants) | function | Get all descendants of a task (recursive). | | [`getDescendantIds()`](/packages/core/api/index#getdescendantids) | function | Get all descendant IDs (flat list). | | [`getParentChain()`](/packages/core/api/index#getparentchain) | function | Get the parent chain (ancestors) from a task up to the root. Returns ordered... | | [`getParentChainIds()`](/packages/core/api/index#getparentchainids) | function | Get the parent chain as IDs. | | [`getDepth()`](/packages/core/api/index#getdepth) | function | Calculate depth of a task in the hierarchy (0-based). Root tasks have depth 0... | | [`getRootAncestor()`](/packages/core/api/index#getrootancestor) | function | Get the root ancestor of a task. | | [`isAncestorOf()`](/packages/core/api/index#isancestorof) | function | Check if a task is an ancestor of another. | | [`isDescendantOf()`](/packages/core/api/index#isdescendantof) | function | Check if a task is a descendant of another. | | [`getSiblings()`](/packages/core/api/index#getsiblings) | function | Get sibling tasks (same parent). | | [`validateHierarchy()`](/packages/core/api/index#validatehierarchy) | function | | | [`wouldCreateCircle()`](/packages/core/api/index#wouldcreatecircle) | function | Detect circular reference if parentId were set. | | [`buildTree()`](/packages/core/api/index#buildtree) | function | | | [`flattenTree()`](/packages/core/api/index#flattentree) | function | Flatten a tree back to a list (depth-first). | | [`resolveHierarchyPolicy()`](/packages/core/api/index#resolvehierarchypolicy) | function | Resolve a full HierarchyPolicy from config, starting with a profile preset an... | | [`assertParentExists()`](/packages/core/api/index#assertparentexists) | function | Assert that a parent task exists in the task list. Returns an error result if... | | [`assertNoCycle()`](/packages/core/api/index#assertnocycle) | function | Assert that re-parenting would not create a cycle. Returns an error result if... | | [`countActiveChildren()`](/packages/core/api/index#countactivechildren) | function | Count active (non-done, non-cancelled, non-archived) children of a parent. | | [`validateHierarchyPlacement()`](/packages/core/api/index#validatehierarchyplacement) | function | Validate whether a new task can be placed under the given parent according to... | | [`loadConfig()`](/packages/core/api/index#loadconfig) | function | Load and merge configuration from all sources. Priority: defaults global con... | | [`getConfigValue()`](/packages/core/api/index#getconfigvalue) | function | Get a single config value with source tracking. Returns the value and which s... | | [`getRawConfigValue()`](/packages/core/api/index#getrawconfigvalue) | function | Get a raw config value from the project config file only (no cascade). Return... | | [`getRawConfig()`](/packages/core/api/index#getrawconfig) | function | Get the full raw project config (no cascade). Returns null if no config file... | | [`parseConfigValue()`](/packages/core/api/index#parseconfigvalue) | function | Parse a string value into its appropriate JS type. Handles booleans, null, in... | | [`setConfigValue()`](/packages/core/api/index#setconfigvalue) | function | Set a config value in the project or global config file (dot-notation support... | | [`applyStrictnessPreset()`](/packages/core/api/index#applystrictnesspreset) | function | Apply a strictness preset to the project (or global) config. Merges preset va... | | [`listStrictnessPresets()`](/packages/core/api/index#liststrictnesspresets) | function | List all available presets with their descriptions and values. Used by the CL... | | [`isMissingBrainSchemaError()`](/packages/core/api/index#ismissingbrainschemaerror) | function | Return true when the error is the "no such table: brain\_\*" SQLite error throw\... | | [`isAutoCaptureEnabled()`](/packages/core/api/index#isautocaptureenabled) | function | Return true when `brain.autoCapture` is enabled for the given project. Resol... | | [`recordDecision()`](/packages/core/api/index#recorddecision) | function | Record a decision to the audit trail. Appends a JSON line to... | | [`getDecisionLog()`](/packages/core/api/index#getdecisionlog) | function | Read the decision log, optionally filtered by sessionId and/or taskId. | | [`computeHandoff()`](/packages/core/api/index#computehandoff) | function | Compute handoff data for a session. Gathers all session statistics and auto-c... | | [`persistHandoff()`](/packages/core/api/index#persisthandoff) | function | Persist handoff data to a session. | | [`getHandoff()`](/packages/core/api/index#gethandoff) | function | Get handoff data for a session. | | [`getLastHandoff()`](/packages/core/api/index#getlasthandoff) | function | Get handoff data for the most recent ended session. Filters by scope if provi... | | [`computeDebrief()`](/packages/core/api/index#computedebrief) | function | Compute rich debrief data for a session. Builds on computeHandoff() and adds... | | [`BrainDataAccessor`](/packages/core/api/index#braindataaccessor) | class | | | [`getBrainAccessor()`](/packages/core/api/index#getbrainaccessor) | function | Factory: get a BrainDataAccessor backed by the brain.db singleton. | | [`typedAll()`](/packages/core/api/index#typedall) | function | Type-safe wrapper for `StatementSync.all` — centralizes the `as unknown as` c... | | [`typedGet()`](/packages/core/api/index#typedget) | function | Type-safe wrapper for `StatementSync.get` — centralizes the `as unknown as` c... | | [`LocalEmbeddingProvider`](/packages/core/api/index#localembeddingprovider) | class | Local embedding provider backed by xenova/transformers. Produces 384-dimensi... | | [`getLocalEmbeddingProvider()`](/packages/core/api/index#getlocalembeddingprovider) | function | Get or create the shared LocalEmbeddingProvider singleton. | | [`setEmbeddingProvider()`](/packages/core/api/index#setembeddingprovider) | function | Register an embedding provider for the brain system. Validates that the provi... | | [`getEmbeddingProvider()`](/packages/core/api/index#getembeddingprovider) | function | Get the currently registered embedding provider, or null. | | [`clearEmbeddingProvider()`](/packages/core/api/index#clearembeddingprovider) | function | Clear the current embedding provider (useful for testing). | | [`embedText()`](/packages/core/api/index#embedtext) | function | Embed text into a float vector using the registered provider. Returns null wh... | | [`isEmbeddingAvailable()`](/packages/core/api/index#isembeddingavailable) | function | Check whether embedding is currently available. | | [`initDefaultProvider()`](/packages/core/api/index#initdefaultprovider) | function | Initialize the default local embedding provider. Loads the LocalEmbeddingPro... | | [`searchSimilar()`](/packages/core/api/index#searchsimilar) | function | Search for entries similar to a query string using vector similarity. 1. Emb... | | [`ensureFts5Tables()`](/packages/core/api/index#ensurefts5tables) | function | Create FTS5 virtual tables and content-sync triggers if they don't exist. Us... | | [`rebuildFts5Index()`](/packages/core/api/index#rebuildfts5index) | function | Rebuild FTS5 indexes from the content tables. Useful after bulk inserts that... | | [`searchBrain()`](/packages/core/api/index#searchbrain) | function | Unified search across all BRAIN memory tables. Uses FTS5 MATCH for full-text... | | [`resetFts5Cache()`](/packages/core/api/index#resetfts5cache) | function | Reset the cached FTS5 availability flag. Used in tests to force re-detection. | | [`hybridSearch()`](/packages/core/api/index#hybridsearch) | function | Hybrid search across FTS5, vector similarity, and graph neighbors. 1. Runs F... | | [`generateMemoryBridgeContent()`](/packages/core/api/index#generatememorybridgecontent) | function | Generate memory bridge content from brain.db. Returns the markdown string (do... | | [`writeMemoryBridge()`](/packages/core/api/index#writememorybridge) | function | Write memory bridge content to .cleo/memory-bridge.md. | | [`refreshMemoryBridge()`](/packages/core/api/index#refreshmemorybridge) | function | Best-effort refresh: call from session.end, tasks.complete, or memory.observe... | | [`generateContextAwareContent()`](/packages/core/api/index#generatecontextawarecontent) | function | Generate context-aware memory bridge content and write to disk. When... | | [`maybeRefreshMemoryBridge()`](/packages/core/api/index#mayberefreshmemorybridge) | function | Refresh the memory bridge if autoRefresh is enabled and the debounce window h... | | [`searchBrainCompact()`](/packages/core/api/index#searchbraincompact) | function | Token-efficient compact search across BRAIN tables. Returns index-level hits... | | [`timelineBrain()`](/packages/core/api/index#timelinebrain) | function | Get chronological context around an anchor entry. Fetches the anchor's full d... | | [`fetchBrainEntries()`](/packages/core/api/index#fetchbrainentries) | function | Batch-fetch full details by IDs. Groups IDs by prefix to query the correct ta... | | [`observeBrain()`](/packages/core/api/index#observebrain) | function | Save an observation to the BRAIN observations table. Replaces the external cl... | | [`populateEmbeddings()`](/packages/core/api/index#populateembeddings) | function | Backfill embeddings for existing observations that lack them. Iterates throu... | | [`queryAudit()`](/packages/core/api/index#queryaudit) | function | Query audit entries from SQLite audit\_log table. Used by session-grade.ts for... | | [`storeLearning()`](/packages/core/api/index#storelearning) | function | Store a new learning. T4769, T5241 | | [`searchLearnings()`](/packages/core/api/index#searchlearnings) | function | Search learnings by criteria. Results sorted by confidence (highest first).... | | [`learningStats()`](/packages/core/api/index#learningstats) | function | Get learning statistics. T4769, T5241 | | [`gradeSession()`](/packages/core/api/index#gradesession) | function | Grade a session by sessionId using the 5-dimension behavioral rubric. | | [`readGrades()`](/packages/core/api/index#readgrades) | function | Read past grade results from .cleo/metrics/GRADES.jsonl | | [`isValidAdapter()`](/packages/core/api/index#isvalidadapter) | function | Validate that a loaded module export implements the CLEOProviderAdapter inter... | | [`loadAdapterFromManifest()`](/packages/core/api/index#loadadapterfrommanifest) | function | Dynamically load and instantiate an adapter from its manifest. Uses the mani... | | [`discoverAdapterManifests()`](/packages/core/api/index#discoveradaptermanifests) | function | Scan the packages/adapters/ directory for adapter packages. Each adapter must... | | [`detectProvider()`](/packages/core/api/index#detectprovider) | function | Detect whether a provider is active in the current environment by checking it... | | [`AdapterManager`](/packages/core/api/index#adaptermanager) | class | Central adapter manager. Singleton per process. Lifecycle: 1. discover() —... | | [`bridgeSessionToMemory()`](/packages/core/api/index#bridgesessiontomemory) | function | Bridge session end data to brain.db as an observation. Builds a summary text... | | [`storeDecision()`](/packages/core/api/index#storedecision) | function | Store a new decision or update an existing one if a duplicate is found. Dupli... | | [`recallDecision()`](/packages/core/api/index#recalldecision) | function | Recall a specific decision by ID. T5155 | | [`searchDecisions()`](/packages/core/api/index#searchdecisions) | function | Search decisions by type, confidence, outcome, and/or free-text query. Query... | | [`listDecisions()`](/packages/core/api/index#listdecisions) | function | List decisions with pagination. T5155 | | [`updateDecisionOutcome()`](/packages/core/api/index#updatedecisionoutcome) | function | Update the outcome of a decision after learning from results. T5155 | | [`storePattern()`](/packages/core/api/index#storepattern) | function | Store a new pattern. If a similar pattern already exists (same type + matchin... | | [`searchPatterns()`](/packages/core/api/index#searchpatterns) | function | Search patterns by criteria. T4768, T5241 | | [`patternStats()`](/packages/core/api/index#patternstats) | function | Get pattern statistics. T4768, T5241 | | [`extractTaskCompletionMemory()`](/packages/core/api/index#extracttaskcompletionmemory) | function | Extract and store memory entries when a task is completed. - Always stores a... | | [`extractSessionEndMemory()`](/packages/core/api/index#extractsessionendmemory) | function | Extract and store memory entries when a session ends. - Stores a process dec... | | [`resolveTaskDetails()`](/packages/core/api/index#resolvetaskdetails) | function | Resolve an array of task IDs to their full Task objects. Tasks that cannot be... | | [`extractFromTranscript()`](/packages/core/api/index#extractfromtranscript) | function | Extract key observations from a provider session transcript and store them in... | | [`handleSessionStart()`](/packages/core/api/index#handlesessionstart) | function | Handle SessionStart - capture initial session context T138: Refresh memory b... | | [`handleSessionEnd()`](/packages/core/api/index#handlesessionend) | function | Handle SessionEnd - capture session summary T138: Refresh memory bridge afte... | | [`handleToolStart()`](/packages/core/api/index#handletoolstart) | function | Handle PreToolUse (maps to task.start in CLEO, canonical: was onToolStart) | | [`handleToolComplete()`](/packages/core/api/index#handletoolcomplete) | function | Handle PostToolUse (maps to task.complete in CLEO, canonical: was onToolCompl... | | [`handleError()`](/packages/core/api/index#handleerror) | function | Handle PostToolUseFailure — capture operation errors to BRAIN. Includes an i... | | [`handleFileChange()`](/packages/core/api/index#handlefilechange) | function | Handle Notification (file-change variant) - capture file changes to BRAIN Ga... | | [`handleSystemNotification()`](/packages/core/api/index#handlesystemnotification) | function | Handle Notification — capture system notifications as BRAIN observations. On... | | [`handleWorkPromptSubmit()`](/packages/core/api/index#handleworkpromptsubmit) | function | Handle PromptSubmit — log incoming mutation intents to BRAIN. Only fires for... | | [`handleWorkResponseComplete()`](/packages/core/api/index#handleworkresponsecomplete) | function | Handle ResponseComplete — capture completed mutations to BRAIN. Only fires f... | | [`handleSubagentStart()`](/packages/core/api/index#handlesubagentstart) | function | Handle SubagentStart — log subagent spawn as a BRAIN observation. Records th... | | [`handleSubagentStop()`](/packages/core/api/index#handlesubagentstop) | function | Handle SubagentStop — log subagent completion result as a BRAIN observation.... | | [`handlePreCompact()`](/packages/core/api/index#handleprecompact) | function | Handle PreCompact — snapshot current session memory context to BRAIN. Fires... | | [`handlePostCompact()`](/packages/core/api/index#handlepostcompact) | function | Handle PostCompact — record compaction completion to BRAIN. Fires immediatel... | | [`recordAssumption()`](/packages/core/api/index#recordassumption) | function | Record an assumption made during a session. Appends to .cleo/audit/assumption... | | [`linkMemoryToTask()`](/packages/core/api/index#linkmemorytotask) | function | Link a memory entry to a task. T5156 | | [`unlinkMemoryFromTask()`](/packages/core/api/index#unlinkmemoryfromtask) | function | Remove a link between a memory entry and a task. T5156 | | [`getTaskLinks()`](/packages/core/api/index#gettasklinks) | function | Get all memory entries linked to a specific task. T5156 | | [`getMemoryLinks()`](/packages/core/api/index#getmemorylinks) | function | Get all tasks linked to a specific memory entry. T5156 | | [`bulkLink()`](/packages/core/api/index#bulklink) | function | Batch create multiple links at once. T5156 | | [`getLinkedDecisions()`](/packages/core/api/index#getlinkeddecisions) | function | Get all decisions linked to a task. Convenience method that fetches full deci... | | [`getLinkedPatterns()`](/packages/core/api/index#getlinkedpatterns) | function | Get all patterns linked to a task. Convenience method that fetches full patte... | | [`getLinkedLearnings()`](/packages/core/api/index#getlinkedlearnings) | function | Get all learnings linked to a task. Convenience method that fetches full lear... | | [`extractMemoryItems()`](/packages/core/api/index#extractmemoryitems) | function | Extract memory-worthy items from debrief data. Pure function -- no side effec... | | [`persistSessionMemory()`](/packages/core/api/index#persistsessionmemory) | function | Main entry point -- called from session.end handler. Extracts memory-worthy c... | | [`buildSummarizationPrompt()`](/packages/core/api/index#buildsummarizationprompt) | function | Build a summarization prompt from debrief data. Returns a formatted prompt s... | | [`ingestStructuredSummary()`](/packages/core/api/index#ingeststructuredsummary) | function | Ingest a structured session summary directly into brain.db. Stores each fiel... | | [`getSessionMemoryContext()`](/packages/core/api/index#getsessionmemorycontext) | function | Retrieve session memory for a given scope. Used by briefing/handoff to enrich... | | [`depsReady()`](/packages/core/api/index#depsready) | function | Check if all dependencies of a task are satisfied. | | [`initializePipeline()`](/packages/core/api/index#initializepipeline) | function | Initialize a new pipeline for a task. Creates a new pipeline record in the d... | | [`getPipeline()`](/packages/core/api/index#getpipeline) | function | Retrieve a pipeline by task ID. Returns the complete pipeline state includin... | | [`advanceStage()`](/packages/core/api/index#advancestage) | function | Advance a pipeline to the next stage. Performs atomic stage transition with... | | [`getCurrentStage()`](/packages/core/api/index#getcurrentstage) | function | Get the current stage of a pipeline. Convenience method to quickly check whi... | | [`listPipelines()`](/packages/core/api/index#listpipelines) | function | List pipelines with optional filtering. | | [`completePipeline()`](/packages/core/api/index#completepipeline) | function | Complete a pipeline (mark all stages done). Marks the pipeline as completed... | | [`cancelPipeline()`](/packages/core/api/index#cancelpipeline) | function | Cancel a pipeline before completion. Marks the pipeline as cancelled (user-i... | | [`pipelineExists()`](/packages/core/api/index#pipelineexists) | function | Check if a pipeline exists for a task. | | [`getPipelineStatistics()`](/packages/core/api/index#getpipelinestatistics) | function | Get pipeline statistics. Returns aggregate counts of pipelines by status and... | | [`getPipelineStages()`](/packages/core/api/index#getpipelinestages) | function | Get all stages for a pipeline. | | [`computeBriefing()`](/packages/core/api/index#computebriefing) | function | Compute the complete session briefing. Aggregates data from all 6+ sources. | | [`findSessions()`](/packages/core/api/index#findsessions) | function | Find sessions with minimal field projection. Loads all sessions, applies fil... | | [`archiveSessions()`](/packages/core/api/index#archivesessions) | function | Archive old/ended sessions. Identifies ended and suspended sessions older tha... | | [`cleanupSessions()`](/packages/core/api/index#cleanupsessions) | function | Remove orphaned sessions, auto-end stale active sessions, and clean up stale... | | [`getContextDrift()`](/packages/core/api/index#getcontextdrift) | function | Compute context drift score for the current session. Compares session progres... | | [`getSessionHistory()`](/packages/core/api/index#getsessionhistory) | function | List session history with focus changes and completed tasks. If sessionId is... | | [`showSession()`](/packages/core/api/index#showsession) | function | Show a specific session. Looks in active sessions first, then session history... | | [`getSessionStats()`](/packages/core/api/index#getsessionstats) | function | Compute session statistics, optionally for a specific session. Throws CleoErr... | | [`suspendSession()`](/packages/core/api/index#suspendsession) | function | Suspend an active session. Sets status to 'suspended' and records the reason.... | | [`switchSession()`](/packages/core/api/index#switchsession) | function | Switch to a different session. Suspends the current active session and activa... | | [`SessionView`](/packages/core/api/index#sessionview) | class | | | [`selectRuntimeProviderContext()`](/packages/core/api/index#selectruntimeprovidercontext) | function | | | [`detectRuntimeProviderContext()`](/packages/core/api/index#detectruntimeprovidercontext) | function | | | [`resetRuntimeProviderContextCache()`](/packages/core/api/index#resetruntimeprovidercontextcache) | function | | | [`parseScope()`](/packages/core/api/index#parsescope) | function | Parse a scope string into a SessionScope. T4463 | | [`readSessions()`](/packages/core/api/index#readsessions) | function | Read sessions from accessor or JSON file. T4463 | | [`saveSessions()`](/packages/core/api/index#savesessions) | function | Save sessions via accessor or JSON file. T4463 | | [`startSession()`](/packages/core/api/index#startsession) | function | Start a new session. T4463 | | [`endSession()`](/packages/core/api/index#endsession) | function | End a session. T4463 | | [`sessionStatus()`](/packages/core/api/index#sessionstatus) | function | Get current session status. T4463 | | [`resumeSession()`](/packages/core/api/index#resumesession) | function | Resume an existing session. T4463 | | [`listSessions()`](/packages/core/api/index#listsessions) | function | List sessions with optional filtering. T4463 | | [`gcSessions()`](/packages/core/api/index#gcsessions) | function | Garbage collect old sessions. Marks orphaned sessions that have been active t... | | [`getEnforcementMode()`](/packages/core/api/index#getenforcementmode) | function | Get the current enforcement mode. | | [`isSessionEnforcementEnabled()`](/packages/core/api/index#issessionenforcementenabled) | function | Check if session enforcement is enabled. | | [`getActiveSessionInfo()`](/packages/core/api/index#getactivesessioninfo) | function | Get active session info. Returns null if no active session. | | [`requireActiveSession()`](/packages/core/api/index#requireactivesession) | function | Require an active session for write operations. In strict mode, throws if no... | | [`validateTaskInScope()`](/packages/core/api/index#validatetaskinscope) | function | Validate that a task is within the current session's scope. Only enforced whe... | | [`createAcceptanceEnforcement()`](/packages/core/api/index#createacceptanceenforcement) | function | | | [`isValidPipelineStage()`](/packages/core/api/index#isvalidpipelinestage) | function | Check whether a string is a valid pipeline stage name. | | [`validatePipelineStage()`](/packages/core/api/index#validatepipelinestage) | function | Validate a pipeline stage name and throw a CleoError on failure. | | [`resolveDefaultPipelineStage()`](/packages/core/api/index#resolvedefaultpipelinestage) | function | Determine the default pipeline stage for a new task. Rules (in priority orde... | | [`getPipelineStageOrder()`](/packages/core/api/index#getpipelinestageorder) | function | Get the numeric order of a pipeline stage (1-based). | | [`isPipelineTransitionForward()`](/packages/core/api/index#ispipelinetransitionforward) | function | Check whether transitioning from `currentStage` to `newStage` is forward-only... | | [`validatePipelineTransition()`](/packages/core/api/index#validatepipelinetransition) | function | Validate a pipeline stage transition and throw if it would move backward. | | [`getLifecycleMode()`](/packages/core/api/index#getlifecyclemode) | function | Read `lifecycle.mode` from config. Falls back to "strict" when unset (matche... | | [`validateEpicCreation()`](/packages/core/api/index#validateepiccreation) | function | Validate that a new epic satisfies creation requirements. In **strict** mode... | | [`validateChildStageCeiling()`](/packages/core/api/index#validatechildstageceiling) | function | Validate that a child task's pipeline stage does not exceed its epic's stage.... | | [`findEpicAncestor()`](/packages/core/api/index#findepicancestor) | function | Find the nearest epic ancestor for a given task. Walks the ancestor chain (r... | | [`validateEpicStageAdvancement()`](/packages/core/api/index#validateepicstageadvancement) | function | Validate that an epic can advance its pipeline stage. An epic is **blocked**... | | [`buildDefaultVerification()`](/packages/core/api/index#builddefaultverification) | function | Build the default verification metadata applied to every new task. Gates are... | | [`validateTitle()`](/packages/core/api/index#validatetitle) | function | Validate a task title. T4460 | | [`validateStatus()`](/packages/core/api/index#validatestatus) | function | Validate task status. T4460 | | [`normalizePriority()`](/packages/core/api/index#normalizepriority) | function | Normalize priority to canonical string format. Accepts both string names ("cr... | | [`validatePriority()`](/packages/core/api/index#validatepriority) | function | Validate task priority. T4460 T4572 | | [`validateTaskType()`](/packages/core/api/index#validatetasktype) | function | Validate task type. T4460 | | [`validateSize()`](/packages/core/api/index#validatesize) | function | Validate task size. T4460 | | [`validateLabels()`](/packages/core/api/index#validatelabels) | function | Validate label format. T4460 | | [`validatePhaseFormat()`](/packages/core/api/index#validatephaseformat) | function | Validate phase slug format. T4460 | | [`validateDepends()`](/packages/core/api/index#validatedepends) | function | Validate dependency IDs exist. T4460 | | [`validateParent()`](/packages/core/api/index#validateparent) | function | Validate parent hierarchy constraints. T4460 | | [`getTaskDepth()`](/packages/core/api/index#gettaskdepth) | function | Get the depth of a task in the hierarchy. T4460 | | [`inferTaskType()`](/packages/core/api/index#infertasktype) | function | Infer task type from parent context. T4460 | | [`getNextPosition()`](/packages/core/api/index#getnextposition) | function | Get the next position for a task within a parent scope. T4460 | | [`logOperation()`](/packages/core/api/index#logoperation) | function | Log an operation to the audit log. T4460 | | [`findRecentDuplicate()`](/packages/core/api/index#findrecentduplicate) | function | Check for recent duplicate task. T4460 | | [`addTask()`](/packages/core/api/index#addtask) | function | Add a new task to the todo file. T4460 | | [`listPhases()`](/packages/core/api/index#listphases) | function | List all phases with status summaries. T4464 | | [`showPhase()`](/packages/core/api/index#showphase) | function | Show the current phase details. T4464 | | [`setPhase()`](/packages/core/api/index#setphase) | function | Set the current project phase. T4464 | | [`startPhase()`](/packages/core/api/index#startphase) | function | Start a phase (pending - active). T4464 | | [`completePhase()`](/packages/core/api/index#completephase) | function | Complete a phase (active - completed). T4464 | | [`advancePhase()`](/packages/core/api/index#advancephase) | function | Advance to the next phase. T4464 | | [`renamePhase()`](/packages/core/api/index#renamephase) | function | Rename a phase and update all task references. T4464 | | [`deletePhase()`](/packages/core/api/index#deletephase) | function | Delete a phase with optional task reassignment. T4464 | | [`pruneAuditLog()`](/packages/core/api/index#pruneauditlog) | function | Prune old audit\_log rows from tasks.db. 1. If auditRetentionDays is 0 or und... | | [`generateProjectHash()`](/packages/core/api/index#generateprojecthash) | function | Canonical project identity hash. SHA-256 of absolute path, first 12 hex chars... | | [`validateAgainstSchema()`](/packages/core/api/index#validateagainstschema) | function | Validate data against a JSON Schema object. Throws CleoError on validation fa... | | [`validateAgainstSchemaFile()`](/packages/core/api/index#validateagainstschemafile) | function | Load a JSON Schema file and validate data against it. | | [`checkSchema()`](/packages/core/api/index#checkschema) | function | Check if data is valid against a schema without throwing. Returns an array of... | | [`resolveSchemaPath()`](/packages/core/api/index#resolveschemapath) | function | Resolve the absolute path to a schema file at runtime. Priority: 1. Global... | | [`getSchemaVersion()`](/packages/core/api/index#getschemaversion) | function | Read the schema version from a resolved schema file. Checks `schemaVersion`... | | [`ensureGlobalSchemas()`](/packages/core/api/index#ensureglobalschemas) | function | Copy ALL bundled schemas from package schemas/ to \~/.cleo/schemas/. - Create... | | [`checkGlobalSchemas()`](/packages/core/api/index#checkglobalschemas) | function | Verify that global schemas are installed and not stale. | | [`checkSchemaStaleness()`](/packages/core/api/index#checkschemastaleness) | function | Compare global schema versions against bundled package versions. | | [`listInstalledSchemas()`](/packages/core/api/index#listinstalledschemas) | function | List all schemas installed in \~/.cleo/schemas/. | | [`cleanProjectSchemas()`](/packages/core/api/index#cleanprojectschemas) | function | Backup and remove deprecated .cleo/schemas/ directory from a project. Schema... | | [`readSchemaVersionFromFile()`](/packages/core/api/index#readschemaversionfromfile) | function | Read the top-level `schemaVersion` field from a schema file. Delegates to the... | | [`checkSchemaIntegrity()`](/packages/core/api/index#checkschemaintegrity) | function | Check integrity of all active JSON files in a CLEO project. | | [`detectProjectType()`](/packages/core/api/index#detectprojecttype) | function | Detect project type from directory contents. Returns a schema-compliant Proje... | | [`getInjectionTemplateContent()`](/packages/core/api/index#getinjectiontemplatecontent) | function | Get the CLEO-INJECTION.md template content from the package templates/ direct... | | [`ensureInjection()`](/packages/core/api/index#ensureinjection) | function | Full injection refresh: strip legacy blocks, inject CAAMP content, install gl... | | [`buildContributorInjectionBlock()`](/packages/core/api/index#buildcontributorinjectionblock) | function | Build a smart, contextual contributor block for AGENTS.md injection. Returns... | | [`checkInjection()`](/packages/core/api/index#checkinjection) | function | Verify injection health: AGENTS.md exists, has CAAMP markers, markers are bal... | | [`fileExists()`](/packages/core/api/index#fileexists) | function | Check if a file exists and is readable. | | [`stripCLEOBlocks()`](/packages/core/api/index#stripcleoblocks) | function | Strip legacy CLEO:START/CLEO:END blocks from a file. Called before CAAMP inje... | | [`removeCleoFromRootGitignore()`](/packages/core/api/index#removecleofromrootgitignore) | function | Remove .cleo/ or .cleo entries from the project root .gitignore. | | [`getPackageRoot()`](/packages/core/api/index#getpackageroot) | function | Resolve the package root directory (where schemas/ and templates/ live). scaf... | | [`getGitignoreContent()`](/packages/core/api/index#getgitignorecontent) | function | Load the gitignore template from the package's templates/ directory. Falls ba... | | [`getCleoVersion()`](/packages/core/api/index#getcleoversion) | function | Read CLEO version from package.json. | | [`createDefaultConfig()`](/packages/core/api/index#createdefaultconfig) | function | Create default config.json content. | | [`ensureCleoStructure()`](/packages/core/api/index#ensurecleostructure) | function | Create .cleo/ directory and all required subdirectories. Idempotent: skips di... | | [`ensureGitignore()`](/packages/core/api/index#ensuregitignore) | function | Create or repair .cleo/.gitignore from template. Idempotent: skips if file al... | | [`ensureConfig()`](/packages/core/api/index#ensureconfig) | function | Create default config.json if missing. Idempotent: skips if file already exists. | | [`ensureProjectInfo()`](/packages/core/api/index#ensureprojectinfo) | function | Create or refresh project-info.json. Idempotent: skips if file already exists... | | [`ensureContributorMcp()`](/packages/core/api/index#ensurecontributormcp) | function | No-op. Kept for API compatibility. | | [`ensureProjectContext()`](/packages/core/api/index#ensureprojectcontext) | function | Detect and write project-context.json. Idempotent: skips if file exists and i... | | [`ensureCleoGitRepo()`](/packages/core/api/index#ensurecleogitrepo) | function | Initialize isolated .cleo/.git checkpoint repository. Idempotent: skips if .c... | | [`ensureSqliteDb()`](/packages/core/api/index#ensuresqlitedb) | function | Create SQLite database if missing. Idempotent: skips if tasks.db already exists. | | [`checkCleoStructure()`](/packages/core/api/index#checkcleostructure) | function | Verify all required .cleo/ subdirectories exist. | | [`checkGitignore()`](/packages/core/api/index#checkgitignore) | function | Verify .cleo/.gitignore exists and matches template. | | [`checkConfig()`](/packages/core/api/index#checkconfig) | function | Verify config.json exists and is valid JSON. | | [`checkProjectInfo()`](/packages/core/api/index#checkprojectinfo) | function | Verify project-info.json exists with required fields. | | [`checkProjectContext()`](/packages/core/api/index#checkprojectcontext) | function | Verify project-context.json exists and is not stale (default: 30 days). | | [`checkCleoGitRepo()`](/packages/core/api/index#checkcleogitrepo) | function | Verify .cleo/.git checkpoint repository exists. | | [`checkSqliteDb()`](/packages/core/api/index#checksqlitedb) | function | Verify .cleo/tasks.db exists and is non-empty. | | [`ensureBrainDb()`](/packages/core/api/index#ensurebraindb) | function | Create brain.db if missing. Idempotent: skips if brain.db already exists. | | [`checkBrainDb()`](/packages/core/api/index#checkbraindb) | function | Verify .cleo/brain.db exists and is non-empty. | | [`checkMemoryBridge()`](/packages/core/api/index#checkmemorybridge) | function | Verify .cleo/memory-bridge.md exists. Warning level if missing (not failure)... | | [`ensureGlobalHome()`](/packages/core/api/index#ensureglobalhome) | function | Ensure the global \~/.cleo/ home directory and its required subdirectories exi... | | [`ensureGlobalTemplates()`](/packages/core/api/index#ensureglobaltemplates) | function | Ensure the global CLEO injection template is installed. Delegates to injectio... | | [`ensureGlobalScaffold()`](/packages/core/api/index#ensureglobalscaffold) | function | Perform a complete global scaffold operation: ensure home and templates are a... | | [`ensureCleoOsHub()`](/packages/core/api/index#ensurecleooshub) | function | Ensure the CleoOS Hub subdirectories exist under the global CLEO home, and se... | | [`checkGlobalHome()`](/packages/core/api/index#checkglobalhome) | function | Check that the global \~/.cleo/ home and its required subdirectories exist. Re... | | [`checkGlobalTemplates()`](/packages/core/api/index#checkglobaltemplates) | function | Check that the global injection template is present and current. Read-only: n... | | [`checkLogDir()`](/packages/core/api/index#checklogdir) | function | Check that the project log directory exists. Read-only: no side effects. | | [`classifyProject()`](/packages/core/api/index#classifyproject) | function | Classify a project directory as greenfield or brownfield. Read-only — never... | | [`ensureGitHooks()`](/packages/core/api/index#ensuregithooks) | function | Install or update managed git hooks from templates/git-hooks/ into .git/hooks... | | [`checkGitHooks()`](/packages/core/api/index#checkgithooks) | function | Verify managed hooks are installed and current. Compares installed hooks in... | | [`detectLegacyAgentOutputs()`](/packages/core/api/index#detectlegacyagentoutputs) | function | Detect legacy agent-output directories in a project. Read-only check — never... | | [`migrateAgentOutputs()`](/packages/core/api/index#migrateagentoutputs) | function | Run the full agent-outputs migration. Copies files from all legacy locations... | | [`migrateJsonToSqlite()`](/packages/core/api/index#migratejsontosqlite) | function | Migrate projects from legacy JSON registry to nexus.db. For each project ent... | | [`getNexusHome()`](/packages/core/api/index#getnexushome) | function | Get path to the NEXUS home directory (cache, etc.). | | [`getNexusCacheDir()`](/packages/core/api/index#getnexuscachedir) | function | Get path to the NEXUS cache directory. | | [`getRegistryPath()`](/packages/core/api/index#getregistrypath) | function | Get path to the legacy projects registry JSON file. | | [`readRegistry()`](/packages/core/api/index#readregistry) | function | Read all projects from nexus.db and return as a NexusRegistryFile. Compatibil... | | [`readRegistryRequired()`](/packages/core/api/index#readregistryrequired) | function | Read the global registry, throwing if not initialized. | | [`nexusInit()`](/packages/core/api/index#nexusinit) | function | Initialize the NEXUS directory structure and nexus.db. Idempotent -- safe to... | | [`nexusRegister()`](/packages/core/api/index#nexusregister) | function | Register a project in the global registry (nexus.db). | | [`nexusUnregister()`](/packages/core/api/index#nexusunregister) | function | Unregister a project from the global registry. | | [`nexusList()`](/packages/core/api/index#nexuslist) | function | List all registered projects. | | [`nexusGetProject()`](/packages/core/api/index#nexusgetproject) | function | Get a project by name or hash. Returns null if not found. | | [`nexusProjectExists()`](/packages/core/api/index#nexusprojectexists) | function | Check if a project exists in the registry. | | [`nexusSync()`](/packages/core/api/index#nexussync) | function | Sync project metadata (task count, labels) for a registered project. | | [`nexusSyncAll()`](/packages/core/api/index#nexussyncall) | function | Sync all registered projects. | | [`nexusSetPermission()`](/packages/core/api/index#nexussetpermission) | function | Update a project's permission level in the registry. Used by permissions.ts t... | | [`nexusReconcile()`](/packages/core/api/index#nexusreconcile) | function | Reconcile the current project's identity with the global nexus registry. 4-s... | | [`analyzeStack()`](/packages/core/api/index#analyzestack) | function | | | [`analyzeArchitecture()`](/packages/core/api/index#analyzearchitecture) | function | | | [`analyzeStructure()`](/packages/core/api/index#analyzestructure) | function | | | [`analyzeConventions()`](/packages/core/api/index#analyzeconventions) | function | | | [`analyzeTesting()`](/packages/core/api/index#analyzetesting) | function | | | [`analyzeIntegrations()`](/packages/core/api/index#analyzeintegrations) | function | | | [`analyzeConcerns()`](/packages/core/api/index#analyzeconcerns) | function | | | [`storeMapToBrain()`](/packages/core/api/index#storemaptobrain) | function | | | [`mapCodebase()`](/packages/core/api/index#mapcodebase) | function | | | [`initAgentDefinition()`](/packages/core/api/index#initagentdefinition) | function | Install cleo-subagent agent definition to \~/.agents/agents/. T4685 | | [`initMcpServer()`](/packages/core/api/index#initmcpserver) | function | No-op. Kept for API compatibility. T4706 | | [`initCoreSkills()`](/packages/core/api/index#initcoreskills) | function | Install CLEO core skills to the canonical skills directory via CAAMP. T4707... | | [`initNexusRegistration()`](/packages/core/api/index#initnexusregistration) | function | Register/reconcile project with NEXUS. Uses nexusReconcile for idempotent han... | | [`installGitHubTemplates()`](/packages/core/api/index#installgithubtemplates) | function | Install GitHub issue and PR templates to .github/ if a git repo exists but .g... | | [`updateDocs()`](/packages/core/api/index#updatedocs) | function | Run update-docs only: refresh all injections without reinitializing. Re-injec... | | [`initProject()`](/packages/core/api/index#initproject) | function | Run full project initialization. Creates the .cleo/ directory structure, ins... | | [`isAutoInitEnabled()`](/packages/core/api/index#isautoinitenabled) | function | Check if auto-init is enabled via environment variable. T4789 | | [`ensureInitialized()`](/packages/core/api/index#ensureinitialized) | function | Check if a project is initialized and auto-init if configured. Returns initi... | | [`getVersion()`](/packages/core/api/index#getversion) | function | Get the current CLEO/project version. Checks VERSION file, then package.json.... | | [`bootstrapGlobalCleo()`](/packages/core/api/index#bootstrapglobalcleo) | function | Bootstrap the global CLEO directory structure and install templates. Creates... | | [`installMcpToProviders()`](/packages/core/api/index#installmcptoproviders) | function | No-op. Kept for API compatibility. | | [`installSkillsGlobally()`](/packages/core/api/index#installskillsglobally) | function | Install CLEO core skills globally via CAAMP. | | [`bootstrapCaamp()`](/packages/core/api/index#bootstrapcaamp) | function | | | [`exportTasks()`](/packages/core/api/index#exporttasks) | function | Export tasks to a portable format. Returns the formatted content and metadata. | | [`importTasks()`](/packages/core/api/index#importtasks) | function | Import tasks from an export file. | | [`recordAgentExecution()`](/packages/core/api/index#recordagentexecution) | function | Record an agent execution event to brain\_decisions. Each event becomes a... | | [`_recordAgentExecutionWithAccessor()`](/packages/core/api/index#recordagentexecutionwithaccessor) | function | Internal implementation that accepts a pre-constructed accessor. Separated fo... | | [`getAgentPerformanceHistory()`](/packages/core/api/index#getagentperformancehistory) | function | Retrieve agent execution performance history from brain\_decisions. Queries a... | | [`_getAgentPerformanceHistoryWithAccessor()`](/packages/core/api/index#getagentperformancehistorywithaccessor) | function | Internal implementation with injected accessor for testability. | | [`recordFailurePattern()`](/packages/core/api/index#recordfailurepattern) | function | Record a task failure pattern to brain\_patterns. When a task fails, the (age... | | [`_recordFailurePatternWithAccessor()`](/packages/core/api/index#recordfailurepatternwithaccessor) | function | Internal implementation with injected accessor. | | [`storeHealingStrategy()`](/packages/core/api/index#storehealingstrategy) | function | Store a healing strategy observation to brain\_observations. When a failure p... | | [`_storeHealingStrategyWithAccessor()`](/packages/core/api/index#storehealingstrategywithaccessor) | function | Internal implementation with injected accessor. | | [`getSelfHealingSuggestions()`](/packages/core/api/index#getselfhealingsuggestions) | function | Get self-healing suggestions for a given agent type and task type. Queries b... | | [`_getSelfHealingSuggestionsWithAccessor()`](/packages/core/api/index#getselfhealingsuggestionswithaccessor) | function | Internal implementation with injected accessor. | | [`processAgentLifecycleEvent()`](/packages/core/api/index#processagentlifecycleevent) | function | Full agent lifecycle event processor. Convenience function that: 1. Records... | | [`getAgentCapacity()`](/packages/core/api/index#getagentcapacity) | function | Get task-count-based remaining capacity for an agent. Remaining capacity =... | | [`getAgentsByCapacity()`](/packages/core/api/index#getagentsbycapacity) | function | List all non-terminal agents sorted by remaining task capacity (descending).... | | [`getAgentSpecializations()`](/packages/core/api/index#getagentspecializations) | function | Get the specialization/skills list for an agent. Specializations are stored... | | [`updateAgentSpecializations()`](/packages/core/api/index#updateagentspecializations) | function | Update the specializations list stored in an agent's metadata. Merges the ne... | | [`recordAgentPerformance()`](/packages/core/api/index#recordagentperformance) | function | Record agent performance metrics to the BRAIN execution history. Translates... | | [`updateCapacity()`](/packages/core/api/index#updatecapacity) | function | Update the capacity value for an agent instance. | | [`getAvailableCapacity()`](/packages/core/api/index#getavailablecapacity) | function | Get the total available capacity across all active agents. Only considers ag... | | [`findLeastLoadedAgent()`](/packages/core/api/index#findleastloadedagent) | function | Find the agent with the most available capacity. | | [`isOverloaded()`](/packages/core/api/index#isoverloaded) | function | Check if the system is overloaded (total capacity below threshold). | | [`getCapacitySummary()`](/packages/core/api/index#getcapacitysummary) | function | Get a capacity summary across the entire agent pool. | | [`recordHeartbeat()`](/packages/core/api/index#recordheartbeat) | function | Record a heartbeat for an agent instance. Updates `last_heartbeat` to the cu... | | [`checkAgentHealth()`](/packages/core/api/index#checkagenthealth) | function | Check the health of a specific agent instance by ID. Queries the agent's cur... | | [`detectStaleAgents()`](/packages/core/api/index#detectstaleagents) | function | Find all non-terminal agents whose last heartbeat is older than `thresholdMs`... | | [`detectCrashedAgents()`](/packages/core/api/index#detectcrashedagents) | function | Find agents with status `active` whose heartbeat has been silent for longer t... | | [`createRetryPolicy()`](/packages/core/api/index#createretrypolicy) | function | Create a retry policy by merging overrides with the default policy. | | [`calculateDelay()`](/packages/core/api/index#calculatedelay) | function | Calculate the delay for a given retry attempt using exponential backoff. | | [`shouldRetry()`](/packages/core/api/index#shouldretry) | function | Determine whether an error should be retried based on its classification and... | | [`withRetry()`](/packages/core/api/index#withretry) | function | Wrap an async function with retry logic using configurable exponential backoff. | | [`recoverCrashedAgents()`](/packages/core/api/index#recovercrashedagents) | function | Attempt to recover crashed agents. Finds all agents with status 'crashed' an... | | [`calculateTaskRisk()`](/packages/core/api/index#calculatetaskrisk) | function | Calculate the risk score for a task based on multiple contributing factors.... | | [`predictValidationOutcome()`](/packages/core/api/index#predictvalidationoutcome) | function | Predict the likelihood of a task passing a lifecycle validation gate. Combin... | | [`gatherLearningContext()`](/packages/core/api/index#gatherlearningcontext) | function | Gather applicable learnings for a task from brain\_learnings. | | [`suggestGateFocus()`](/packages/core/api/index#suggestgatefocus) | function | Suggest which verification gates to focus on for a task, ordered by risk. Us... | | [`scoreVerificationConfidence()`](/packages/core/api/index#scoreverificationconfidence) | function | Compute a confidence score for a completed verification round and persist it... | | [`storePrediction()`](/packages/core/api/index#storeprediction) | function | Store a validation prediction as a brain observation for future learning. Sa... | | [`predictAndStore()`](/packages/core/api/index#predictandstore) | function | Compute a prediction for a task and immediately persist it to brain. Conveni... | | [`detectCircularDeps()`](/packages/core/api/index#detectcirculardeps) | function | Detect circular dependencies using DFS. Returns the cycle path if found, empt... | | [`wouldCreateCycle()`](/packages/core/api/index#wouldcreatecycle) | function | Check if adding a dependency would create a cycle. | | [`getBlockedTasks()`](/packages/core/api/index#getblockedtasks) | function | Get tasks that are blocked (have unmet dependencies). | | [`getReadyTasks()`](/packages/core/api/index#getreadytasks) | function | Get tasks that are ready (all dependencies met). | | [`getDependents()`](/packages/core/api/index#getdependents) | function | Get tasks that depend on a given task. | | [`getDependentIds()`](/packages/core/api/index#getdependentids) | function | Get dependent IDs. | | [`getUnresolvedDeps()`](/packages/core/api/index#getunresolveddeps) | function | Get unresolved dependencies for a task (deps that are not done/cancelled). | | [`validateDependencyRefs()`](/packages/core/api/index#validatedependencyrefs) | function | Validate dependencies for missing references. | | [`validateDependencies()`](/packages/core/api/index#validatedependencies) | function | Full dependency graph validation. | | [`topologicalSort()`](/packages/core/api/index#topologicalsort) | function | Topological sort of tasks by dependencies. Returns sorted task IDs or null if... | | [`getTransitiveBlockers()`](/packages/core/api/index#gettransitiveblockers) | function | Walk upstream recursively through a task's dependency chain. Returns all non-... | | [`getLeafBlockers()`](/packages/core/api/index#getleafblockers) | function | From the transitive blockers, return only "leaf" blockers — those whose own d... | | [`computeDependencyWaves()`](/packages/core/api/index#computedependencywaves) | function | Compute dependency waves for parallel execution. Tasks in the same wave can r... | | [`getNextTask()`](/packages/core/api/index#getnexttask) | function | Get the next task to work on (highest priority ready task). | | [`getCriticalPath()`](/packages/core/api/index#getcriticalpath) | function | Calculate the critical path (longest dependency chain). Returns task IDs alon... | | [`getTaskOrder()`](/packages/core/api/index#gettaskorder) | function | Get task ordering by dependency + priority. | | [`getParallelTasks()`](/packages/core/api/index#getparalleltasks) | function | Get parallelizable tasks (tasks with no unmet dependencies). | | [`analyzeTaskImpact()`](/packages/core/api/index#analyzetaskimpact) | function | Analyze the full downstream impact of a task. Computes direct and transitive... | | [`analyzeChangeImpact()`](/packages/core/api/index#analyzechangeimpact) | function | Analyze the downstream effects of a specific change to a task. Predicts what... | | [`calculateBlastRadius()`](/packages/core/api/index#calculateblastradius) | function | Calculate the blast radius for a task. Quantifies how many tasks, epics, and... | | [`predictImpact()`](/packages/core/api/index#predictimpact) | function | Predict the downstream impact of a free-text change description. Uses fuzzy... | | [`extractPatternsFromHistory()`](/packages/core/api/index#extractpatternsfromhistory) | function | Analyze brain\_observations and task history to find recurring patterns. Dete... | | [`matchPatterns()`](/packages/core/api/index#matchpatterns) | function | Find which known patterns from brain\_patterns apply to a given task. Compare... | | [`storeDetectedPattern()`](/packages/core/api/index#storedetectedpattern) | function | Save a detected pattern to the brain\_patterns table. Uses the existing brain... | | [`updatePatternStats()`](/packages/core/api/index#updatepatternstats) | function | Update the frequency and success\_rate of an existing pattern after an outcome... | | [`validateSyntax()`](/packages/core/api/index#validatesyntax) | function | Validate a query string matches expected syntax. | | [`parseQuery()`](/packages/core/api/index#parsequery) | function | Parse a query string into its components. | | [`getCurrentProject()`](/packages/core/api/index#getcurrentproject) | function | Get the current project name from context. Reads .cleo/project-info.json or f... | | [`resolveProjectPath()`](/packages/core/api/index#resolveprojectpath) | function | Resolve a project name to its filesystem path. Handles special cases: "." (cu... | | [`resolveTask()`](/packages/core/api/index#resolvetask) | function | Resolve a query to task data. For wildcard queries, returns an array of match... | | [`getProjectFromQuery()`](/packages/core/api/index#getprojectfromquery) | function | Extract the project name from a query without full resolution. Useful for per... | | [`extractKeywords()`](/packages/core/api/index#extractkeywords) | function | Extract meaningful keywords from text (filters stop words and short tokens). | | [`discoverRelated()`](/packages/core/api/index#discoverrelated) | function | Discover tasks related to a given task query across projects. Returns a stru... | | [`searchAcrossProjects()`](/packages/core/api/index#searchacrossprojects) | function | Search for tasks across all registered projects. Returns a structured result... | | [`permissionLevel()`](/packages/core/api/index#permissionlevel) | function | Convert a permission string to its numeric level. Returns 0 for invalid/unkno... | | [`getPermission()`](/packages/core/api/index#getpermission) | function | Get the permission level for a registered project. Returns 'read' as default... | | [`checkPermission()`](/packages/core/api/index#checkpermission) | function | Check if a project has sufficient permissions (non-throwing). Uses hierarchic... | | [`requirePermission()`](/packages/core/api/index#requirepermission) | function | Require a permission level or throw CleoError. Used as a guard at the start o... | | [`checkPermissionDetail()`](/packages/core/api/index#checkpermissiondetail) | function | Full permission check returning a structured result. | | [`setPermission()`](/packages/core/api/index#setpermission) | function | Set the permission level for a project. Validates the permission value and up... | | [`canRead()`](/packages/core/api/index#canread) | function | Convenience: check read access. | | [`canWrite()`](/packages/core/api/index#canwrite) | function | Convenience: check write access. | | [`canExecute()`](/packages/core/api/index#canexecute) | function | Convenience: check execute access. | | [`matchesPattern()`](/packages/core/api/index#matchespattern) | function | Match a file path against a glob-like pattern. Supports: '\*' (single segment... | | [`getSharingStatus()`](/packages/core/api/index#getsharingstatus) | function | Get the sharing status: which .cleo/ files are tracked vs ignored, plus git s... | | [`syncGitignore()`](/packages/core/api/index#syncgitignore) | function | Sync the project .gitignore to match the sharing config. Adds/updates a manag... | | [`currentTask()`](/packages/core/api/index#currenttask) | function | Show current task work state. T4462 T4750 | | [`startTask()`](/packages/core/api/index#starttask) | function | Start working on a specific task. T4462 T4750 | | [`stopTask()`](/packages/core/api/index#stoptask) | function | Stop working on the current task. T4462 T4750 | | [`getWorkHistory()`](/packages/core/api/index#getworkhistory) | function | Get task work history from session notes. T4462 T4750 | | [`completeTask()`](/packages/core/api/index#completetask) | function | Complete a task by ID. Handles dependency checking and optional auto-completi... | | [`validateTitleDescription()`](/packages/core/api/index#validatetitledescription) | function | Validate that title and description are both present and different. This is a... | | [`validateTimestamps()`](/packages/core/api/index#validatetimestamps) | function | Validate that timestamps are not in the future | | [`validateIdUniqueness()`](/packages/core/api/index#validateiduniqueness) | function | Validate ID uniqueness across all tasks (todo + archive) | | [`validateNoDuplicateDescription()`](/packages/core/api/index#validatenoduplicatedescription) | function | Validate no duplicate task descriptions | | [`validateHierarchy()`](/packages/core/api/index#validatehierarchy) | function | Validate hierarchy constraints. Accepts optional limits to override defaults... | | [`validateStatusTransition()`](/packages/core/api/index#validatestatustransition) | function | Validate status transition | | [`validateNewTask()`](/packages/core/api/index#validatenewtask) | function | Run all validation rules on a task being created | | [`hasErrors()`](/packages/core/api/index#haserrors) | function | Check if violations contain any errors (not just warnings) | | [`updateTask()`](/packages/core/api/index#updatetask) | function | Update a task's fields. T4461 | | [`parseDirective()`](/packages/core/api/index#parsedirective) | function | Parse a Conduit message into a structured directive. Extracts directive verb... | | [`routeDirective()`](/packages/core/api/index#routedirective) | function | Route a Conduit directive to the correct project's CLEO instance. Resolves w\... | | [`workspaceStatus()`](/packages/core/api/index#workspacestatus) | function | Get aggregated task status across all registered projects. Returns per-proje... | | [`workspaceAgents()`](/packages/core/api/index#workspaceagents) | function | Get all agents registered across all projects. Queries each project's agent\_... | | [`invalidateDepsCache()`](/packages/core/api/index#invalidatedepscache) | function | Invalidate the cached TaskFile (call after writes). T4659 T4654 | | [`buildGraph()`](/packages/core/api/index#buildgraph) | function | Build an adjacency graph from task dependencies. T4464 | | [`getDepsOverview()`](/packages/core/api/index#getdepsoverview) | function | Get dependency overview for all tasks. T4464 | | [`getTaskDeps()`](/packages/core/api/index#gettaskdeps) | function | Get dependencies for a specific task. T4464 | | [`topologicalSort()`](/packages/core/api/index#topologicalsort) | function | Topological sort of tasks respecting dependencies. Returns tasks in execution... | | [`getExecutionWaves()`](/packages/core/api/index#getexecutionwaves) | function | Group tasks into parallelizable execution waves. T4464 | | [`getCriticalPath()`](/packages/core/api/index#getcriticalpath) | function | Find the critical path (longest dependency chain) from a task. T4464 | | [`getImpact()`](/packages/core/api/index#getimpact) | function | Find all tasks affected by changes to a given task. T4464 | | [`detectCycles()`](/packages/core/api/index#detectcycles) | function | Detect circular dependencies in the task graph. T4464 | | [`getTaskTree()`](/packages/core/api/index#gettasktree) | function | Build task hierarchy tree. T4464 | | [`addRelation()`](/packages/core/api/index#addrelation) | function | Manage task relationships (relates/blocks). T4464 | | [`buildDependencyGraph()`](/packages/core/api/index#builddependencygraph) | function | Build a dependency graph for a set of tasks. Returns a Map from task ID to t... | | [`detectCircularDependencies()`](/packages/core/api/index#detectcirculardependencies) | function | Detect circular dependencies using DFS traversal. | | [`findMissingDependencies()`](/packages/core/api/index#findmissingdependencies) | function | Find missing dependencies — deps that reference tasks outside the epic that a... | | [`analyzeDependencies()`](/packages/core/api/index#analyzedependencies) | function | Perform full dependency analysis for an epic's children. Combines dependency... | | [`countManifestEntries()`](/packages/core/api/index#countmanifestentries) | function | Count manifest entries from pipeline\_manifest (ADR-027). | | [`estimateContext()`](/packages/core/api/index#estimatecontext) | function | Estimate context usage for orchestration. | | [`OrchestrationHierarchyImpl`](/packages/core/api/index#orchestrationhierarchyimpl) | class | Concrete implementation of OrchestrationHierarchyAPI. | | [`computeWaves()`](/packages/core/api/index#computewaves) | function | Compute execution waves using topological sort. | | [`getEnrichedWaves()`](/packages/core/api/index#getenrichedwaves) | function | Get enriched wave data for an epic. | | [`countByStatus()`](/packages/core/api/index#countbystatus) | function | Count tasks by status. | | [`computeEpicStatus()`](/packages/core/api/index#computeepicstatus) | function | Compute epic-specific status. | | [`computeOverallStatus()`](/packages/core/api/index#computeoverallstatus) | function | Compute overall orchestration status across all tasks. | | [`computeProgress()`](/packages/core/api/index#computeprogress) | function | Compute progress metrics for all tasks. | | [`computeStartupSummary()`](/packages/core/api/index#computestartupsummary) | function | Compute startup summary for an epic. | | [`startOrchestration()`](/packages/core/api/index#startorchestration) | function | Start an orchestrator session for an epic. T4466 | | [`analyzeEpic()`](/packages/core/api/index#analyzeepic) | function | Analyze an epic's dependency structure. T4466 | | [`getReadyTasks()`](/packages/core/api/index#getreadytasks) | function | Get parallel-safe ready tasks for an epic. T4466 | | [`getNextTask()`](/packages/core/api/index#getnexttask) | function | Get the next task to work on for an epic. T4466 | | [`prepareSpawn()`](/packages/core/api/index#preparespawn) | function | Prepare a spawn context for a subagent. T4466 | | [`validateSpawnOutput()`](/packages/core/api/index#validatespawnoutput) | function | Validate a subagent's output. T4466 | | [`getOrchestratorContext()`](/packages/core/api/index#getorchestratorcontext) | function | Get orchestrator context summary. T4466 | | [`autoDispatch()`](/packages/core/api/index#autodispatch) | function | Auto-dispatch: determine the protocol for a task based on metadata. T4466 | | [`resolveTokens()`](/packages/core/api/index#resolvetokens) | function | Resolve tokens in a prompt string. T4466 | | [`getLinksByProvider()`](/packages/core/api/index#getlinksbyprovider) | function | Find all links for a given provider. | | [`getLinkByExternalId()`](/packages/core/api/index#getlinkbyexternalid) | function | Find a link by provider + external ID. | | [`getLinksByTaskId()`](/packages/core/api/index#getlinksbytaskid) | function | Find all links for a given CLEO task. | | [`createLink()`](/packages/core/api/index#createlink) | function | Create a new external task link. | | [`touchLink()`](/packages/core/api/index#touchlink) | function | Update the lastSyncAt and optionally the title/metadata for an existing link. | | [`removeLinksByProvider()`](/packages/core/api/index#removelinksbyprovider) | function | Remove all links for a provider (used during provider deregistration). | | [`reconcile()`](/packages/core/api/index#reconcile) | function | Reconcile external task state with CLEO's authoritative task store. | | [`getArtifactHandler()`](/packages/core/api/index#getartifacthandler) | function | Get handler for an artifact type. T4552 | | [`hasArtifactHandler()`](/packages/core/api/index#hasartifacthandler) | function | Check if a handler is registered for an artifact type. T4552 | | [`buildArtifact()`](/packages/core/api/index#buildartifact) | function | Build an artifact using the appropriate handler. T4552 | | [`validateArtifact()`](/packages/core/api/index#validateartifact) | function | Validate an artifact using the appropriate handler. T4552 | | [`publishArtifact()`](/packages/core/api/index#publishartifact) | function | Publish an artifact using the appropriate handler. T4552 | | [`getSupportedArtifactTypes()`](/packages/core/api/index#getsupportedartifacttypes) | function | Get all supported artifact types. T4552 | | [`parseChangelogBlocks()`](/packages/core/api/index#parsechangelogblocks) | function | Parse \[custom-log]...\[/custom-log] blocks from a CHANGELOG section. Returns t... | | [`writeChangelogSection()`](/packages/core/api/index#writechangelogsection) | function | Write or update a CHANGELOG.md section for a specific version. - If ## \[VERS... | | [`loadReleaseConfig()`](/packages/core/api/index#loadreleaseconfig) | function | Load release configuration with defaults. | | [`validateReleaseConfig()`](/packages/core/api/index#validatereleaseconfig) | function | Validate release configuration. | | [`getArtifactType()`](/packages/core/api/index#getartifacttype) | function | Get artifact type from config. | | [`getReleaseGates()`](/packages/core/api/index#getreleasegates) | function | Get release gates from config. | | [`getChangelogConfig()`](/packages/core/api/index#getchangelogconfig) | function | Get changelog configuration. | | [`getDefaultGitFlowConfig()`](/packages/core/api/index#getdefaultgitflowconfig) | function | Return the default GitFlow branch configuration. | | [`getGitFlowConfig()`](/packages/core/api/index#getgitflowconfig) | function | Merge caller-supplied GitFlow config with defaults. | | [`getDefaultChannelConfig()`](/packages/core/api/index#getdefaultchannelconfig) | function | Return the default channel configuration. | | [`getChannelConfig()`](/packages/core/api/index#getchannelconfig) | function | Merge caller-supplied channel config with defaults. | | [`getPushMode()`](/packages/core/api/index#getpushmode) | function | Return the configured push mode, defaulting to 'auto'. | | [`getDefaultChannelConfig()`](/packages/core/api/index#getdefaultchannelconfig) | function | Return the default branch-to-channel mapping. | | [`resolveChannelFromBranch()`](/packages/core/api/index#resolvechannelfrombranch) | function | Resolve the release channel for a given Git branch name. Resolution order: 1... | | [`channelToDistTag()`](/packages/core/api/index#channeltodisttag) | function | Map a release channel to its npm dist-tag string. Kept as an explicit functi... | | [`validateVersionChannel()`](/packages/core/api/index#validateversionchannel) | function | Validate that a version string satisfies the pre-release conventions for the... | | [`describeChannel()`](/packages/core/api/index#describechannel) | function | Return a human-readable description of the given release channel. | | [`getPlatformPath()`](/packages/core/api/index#getplatformpath) | function | Get the output path for a CI platform. | | [`detectCIPlatform()`](/packages/core/api/index#detectciplatform) | function | Detect the CI platform from the project. | | [`generateCIConfig()`](/packages/core/api/index#generateciconfig) | function | Generate CI config for a platform. | | [`writeCIConfig()`](/packages/core/api/index#writeciconfig) | function | Write CI config to the appropriate path. | | [`validateCIConfig()`](/packages/core/api/index#validateciconfig) | function | Validate an existing CI config. | | [`isGhCliAvailable()`](/packages/core/api/index#isghcliavailable) | function | Check if the `gh` CLI is available by attempting to run `gh --version`. Does... | | [`extractRepoOwnerAndName()`](/packages/core/api/index#extractrepoownerandname) | function | Parse a GitHub remote URL (HTTPS or SSH) into owner and repo components. Retu... | | [`detectBranchProtection()`](/packages/core/api/index#detectbranchprotection) | function | Detect whether a branch has protection rules enabled. Strategy 1 (preferred)... | | [`buildPRBody()`](/packages/core/api/index#buildprbody) | function | Build the markdown body for a GitHub pull request. | | [`formatManualPRInstructions()`](/packages/core/api/index#formatmanualprinstructions) | function | Format human-readable instructions for creating a PR manually. | | [`createPullRequest()`](/packages/core/api/index#createpullrequest) | function | Create a GitHub pull request using the `gh` CLI, or return manual instruction... | | [`checkEpicCompleteness()`](/packages/core/api/index#checkepiccompleteness) | function | Check epic completeness for a set of release task IDs. Verifies all children... | | [`checkDoubleListing()`](/packages/core/api/index#checkdoublelisting) | function | Check if any tasks are listed in multiple releases. | | [`validateVersionFormat()`](/packages/core/api/index#validateversionformat) | function | Validate version format (semver X.Y.Z or CalVer YYYY.M.patch, with optional p... | | [`isCalVer()`](/packages/core/api/index#iscalver) | function | Check if a version string is CalVer format. | | [`calculateNewVersion()`](/packages/core/api/index#calculatenewversion) | function | Calculate new version from current + bump type. | | [`getVersionBumpConfig()`](/packages/core/api/index#getversionbumpconfig) | function | Get version bump configuration, mapping config field names to VersionBumpTarget. | | [`isVersionBumpConfigured()`](/packages/core/api/index#isversionbumpconfigured) | function | Check if version bump is configured. | | [`bumpVersionFromConfig()`](/packages/core/api/index#bumpversionfromconfig) | function | Bump version in all configured files. | | [`prepareRelease()`](/packages/core/api/index#preparerelease) | function | Prepare a release (create a release manifest entry). T4788 | | [`generateReleaseChangelog()`](/packages/core/api/index#generatereleasechangelog) | function | Generate changelog for a release. T4788 | | [`listManifestReleases()`](/packages/core/api/index#listmanifestreleases) | function | List all releases. T4788 | | [`showManifestRelease()`](/packages/core/api/index#showmanifestrelease) | function | Show release details. T4788 | | [`commitRelease()`](/packages/core/api/index#commitrelease) | function | Mark release as committed (metadata only). T4788 | | [`tagRelease()`](/packages/core/api/index#tagrelease) | function | Mark release as tagged (metadata only). T4788 | | [`runReleaseGates()`](/packages/core/api/index#runreleasegates) | function | Run release validation gates. T4788 T5586 | | [`cancelRelease()`](/packages/core/api/index#cancelrelease) | function | Cancel and remove a release in draft or prepared state. Only releases that ha... | | [`rollbackRelease()`](/packages/core/api/index#rollbackrelease) | function | Rollback a release. T4788 | | [`pushRelease()`](/packages/core/api/index#pushrelease) | function | Push release to remote via git. Respects config.release.push policy: - remot... | | [`markReleasePushed()`](/packages/core/api/index#markreleasepushed) | function | Update release status after push, with optional provenance fields. T4788 T5580 | | [`migrateReleasesJsonToSqlite()`](/packages/core/api/index#migratereleasesjsontosqlite) | function | One-time migration: read .cleo/releases.json and insert each release into the... | | [`serializeSession()`](/packages/core/api/index#serializesession) | function | Serialize a session into a complete snapshot. Captures the full session stat... | | [`restoreSession()`](/packages/core/api/index#restoresession) | function | Restore a session from a snapshot. Hydrates a session from a previously seri... | | [`archiveSticky()`](/packages/core/api/index#archivesticky) | function | Archive a sticky note. | | [`convertStickyToTask()`](/packages/core/api/index#convertstickytotask) | function | Convert a sticky note to a task. | | [`convertStickyToMemory()`](/packages/core/api/index#convertstickytomemory) | function | Convert a sticky note to a memory observation. | | [`convertStickyToTaskNote()`](/packages/core/api/index#convertstickytotasknote) | function | Convert a sticky note to a task note. | | [`convertStickyToSessionNote()`](/packages/core/api/index#convertstickytosessionnote) | function | Convert a sticky note to a session note. | | [`generateStickyId()`](/packages/core/api/index#generatestickyid) | function | Generate the next sticky note ID. Finds the highest existing SN-XXX ID and i... | | [`addSticky()`](/packages/core/api/index#addsticky) | function | Create a new sticky note. | | [`listStickies()`](/packages/core/api/index#liststickies) | function | List sticky notes with optional filters. | | [`purgeSticky()`](/packages/core/api/index#purgesticky) | function | Purge (permanently delete) a sticky note. | | [`getSticky()`](/packages/core/api/index#getsticky) | function | Get a sticky note by ID. | | [`archiveTasks()`](/packages/core/api/index#archivetasks) | function | Archive completed (and optionally cancelled) tasks. Moves them from active ta... | | [`deleteTask()`](/packages/core/api/index#deletetask) | function | Delete a task (soft delete - moves to archive). T4461 | | [`Cleo`](/packages/core/api/index#cleo) | class | | | [`calculateExportChecksum()`](/packages/core/api/index#calculateexportchecksum) | function | Calculate SHA-256 checksum for export integrity (truncated to 16 hex chars). | | [`verifyExportChecksum()`](/packages/core/api/index#verifyexportchecksum) | function | Verify export package checksum. | | [`buildIdMap()`](/packages/core/api/index#buildidmap) | function | Build ID map from tasks. | | [`buildRelationshipGraph()`](/packages/core/api/index#buildrelationshipgraph) | function | Build relationship graph from tasks. | | [`buildExportPackage()`](/packages/core/api/index#buildexportpackage) | function | Build a complete export package. | | [`exportSingle()`](/packages/core/api/index#exportsingle) | function | Export a single task. | | [`exportSubtree()`](/packages/core/api/index#exportsubtree) | function | Export a subtree (task + all descendants). | | [`exportTasksPackage()`](/packages/core/api/index#exporttaskspackage) | function | Export tasks to a portable cross-project package. | | [`getCostHint()`](/packages/core/api/index#getcosthint) | function | Determine cost hint for an operation based on domain and operation name. | | [`groupOperationsByDomain()`](/packages/core/api/index#groupoperationsbydomain) | function | Group operations by domain into a compact format. | | [`buildVerboseOperations()`](/packages/core/api/index#buildverboseoperations) | function | Build verbose operation entries with cost hints. | | [`computeHelp()`](/packages/core/api/index#computehelp) | function | Compute the help result for the admin.help operation. Accepts the full OPERA... | | [`getNextAvailableId()`](/packages/core/api/index#getnextavailableid) | function | Get the next available task ID number from existing tasks. | | [`generateRemapTable()`](/packages/core/api/index#generateremaptable) | function | Generate a remap table for importing tasks. Maps source task IDs to new seque... | | [`validateRemapTable()`](/packages/core/api/index#validateremaptable) | function | Validate that a remap table is complete and consistent. | | [`remapTaskId()`](/packages/core/api/index#remaptaskid) | function | Remap a single task ID, returning original if not in table. | | [`remapTaskReferences()`](/packages/core/api/index#remaptaskreferences) | function | Remap all ID references in a task. | | [`detectDuplicateTitles()`](/packages/core/api/index#detectduplicatetitles) | function | Detect duplicate titles between import and target. | | [`resolveDuplicateTitle()`](/packages/core/api/index#resolveduplicatetitle) | function | Resolve duplicate title by appending suffix. | | [`importFromPackage()`](/packages/core/api/index#importfrompackage) | function | Import tasks from an in-memory ExportPackage with ID remapping. Core logic ex... | | [`importTasksPackage()`](/packages/core/api/index#importtaskspackage) | function | Import tasks from a cross-project export package file with ID remapping. Thin... | | [`findAdrs()`](/packages/core/api/index#findadrs) | function | | | [`listAdrs()`](/packages/core/api/index#listadrs) | function | List ADRs from .cleo/adrs/ directory with optional status filter | | [`showAdr()`](/packages/core/api/index#showadr) | function | Retrieve a single ADR by ID (e.g., 'ADR-007') | | [`validateAllAdrs()`](/packages/core/api/index#validatealladrs) | function | Validate all ADRs in .cleo/adrs/ against the schema | | [`providerList()`](/packages/core/api/index#providerlist) | function | List all registered providers. T4332 | | [`providerGet()`](/packages/core/api/index#providerget) | function | Get a single provider by ID or alias. T4332 | | [`providerDetect()`](/packages/core/api/index#providerdetect) | function | Detect all providers installed on the system. T4332 | | [`providerInstalled()`](/packages/core/api/index#providerinstalled) | function | Get providers that are installed on the system. T4332 | | [`providerCount()`](/packages/core/api/index#providercount) | function | Get count of registered providers. T4332 | | [`registryVersion()`](/packages/core/api/index#registryversion) | function | Get CAAMP registry version. T4332 | | [`injectionCheck()`](/packages/core/api/index#injectioncheck) | function | Check injection status for a single file. T4332 | | [`injectionCheckAll()`](/packages/core/api/index#injectioncheckall) | function | Check injection status across all providers. T4332 | | [`injectionUpdate()`](/packages/core/api/index#injectionupdate) | function | Inject or update content in a single file. T4332 | | [`injectionUpdateAll()`](/packages/core/api/index#injectionupdateall) | function | Inject content to all providers' instruction files. T4332 | | [`batchInstallWithRollback()`](/packages/core/api/index#batchinstallwithrollback) | function | Install multiple skills atomically with rollback on failure. T4705 T4663 | | [`checkProviderCapability()`](/packages/core/api/index#checkprovidercapability) | function | Check if provider supports a specific capability | | [`checkProviderCapabilities()`](/packages/core/api/index#checkprovidercapabilities) | function | Check multiple capabilities at once | | [`detectLanguage()`](/packages/core/api/index#detectlanguage) | function | Detect tree-sitter language from a file path. | | [`grammarPackage()`](/packages/core/api/index#grammarpackage) | function | Get the npm grammar package name for a language. | | [`isTreeSitterAvailable()`](/packages/core/api/index#istreesitteravailable) | function | Check if tree-sitter CLI is available and executable. Cached after first call. | | [`parseFile()`](/packages/core/api/index#parsefile) | function | Parse a single file and extract code symbols. | | [`batchParse()`](/packages/core/api/index#batchparse) | function | Batch-parse multiple files, grouping by language for efficiency. Files with... | | [`smartOutline()`](/packages/core/api/index#smartoutline) | function | Generate a smart outline for a source file. Returns a tree of symbols with s... | | [`smartSearch()`](/packages/core/api/index#smartsearch) | function | Search for symbols across a codebase. Walks the directory tree, batch-parses... | | [`smartUnfold()`](/packages/core/api/index#smartunfold) | function | Extract a symbol's complete source from a file. Finds the symbol by name (su... | | [`getComplianceJsonlPath()`](/packages/core/api/index#getcompliancejsonlpath) | function | Resolve COMPLIANCE.jsonl path for a project root. | | [`readComplianceJsonl()`](/packages/core/api/index#readcompliancejsonl) | function | Read COMPLIANCE.jsonl entries. Invalid JSON lines are skipped to preserve app... | | [`appendComplianceJsonl()`](/packages/core/api/index#appendcompliancejsonl) | function | Append one entry to COMPLIANCE.jsonl, creating directories as needed. | | [`getComplianceSummary()`](/packages/core/api/index#getcompliancesummary) | function | Get compliance summary. | | [`listComplianceViolations()`](/packages/core/api/index#listcomplianceviolations) | function | List compliance violations. | | [`getComplianceTrend()`](/packages/core/api/index#getcompliancetrend) | function | Get compliance trend. | | [`auditEpicCompliance()`](/packages/core/api/index#auditepiccompliance) | function | Audit epic compliance. | | [`syncComplianceMetrics()`](/packages/core/api/index#synccompliancemetrics) | function | Sync compliance metrics to a summary file. | | [`getSkillReliability()`](/packages/core/api/index#getskillreliability) | function | Get skill reliability stats. | | [`getValueMetrics()`](/packages/core/api/index#getvaluemetrics) | function | Get value metrics (T2833). | | [`ConduitClient`](/packages/core/api/index#conduitclient) | class | ConduitClient wraps a Transport, adding high-level messaging semantics. | | [`HttpTransport`](/packages/core/api/index#httptransport) | class | HTTP transport with automatic primary/fallback failover. | | [`LocalTransport`](/packages/core/api/index#localtransport) | class | In-process SQLite transport for fully offline agent messaging. | | [`SseTransport`](/packages/core/api/index#ssetransport) | class | SseTransport — real-time SSE with HTTP polling fallback. | | [`resolveTransport()`](/packages/core/api/index#resolvetransport) | function | Resolve the best available transport for a credential. Cloud-backed agents (... | | [`createConduit()`](/packages/core/api/index#createconduit) | function | Create a Conduit instance from the agent registry. | | [`getContextStatus()`](/packages/core/api/index#getcontextstatus) | function | Get context status. | | [`checkContextThreshold()`](/packages/core/api/index#checkcontextthreshold) | function | Check context threshold (returns exit code info). | | [`listContextSessions()`](/packages/core/api/index#listcontextsessions) | function | List all context state files. | | [`validatePayload()`](/packages/core/api/index#validatepayload) | function | Validate a hook payload against its event-specific Zod schema. Falls back to... | | [`injectTasks()`](/packages/core/api/index#injecttasks) | function | Inject tasks for external consumption. | | [`collectDiagnostics()`](/packages/core/api/index#collectdiagnostics) | function | Collect system diagnostics for bug reports. | | [`formatDiagnosticsTable()`](/packages/core/api/index#formatdiagnosticstable) | function | Format diagnostics as markdown table. | | [`parseIssueTemplates()`](/packages/core/api/index#parseissuetemplates) | function | Parse all issue templates from available sources. Priority: 1. Packaged tem... | | [`getTemplateConfig()`](/packages/core/api/index#gettemplateconfig) | function | Get template configuration - tries live parse, cache, then fallback. | | [`getTemplateForSubcommand()`](/packages/core/api/index#gettemplateforsubcommand) | function | Get the template for a specific subcommand (bug, feature, etc.). | | [`cacheTemplates()`](/packages/core/api/index#cachetemplates) | function | Cache parsed templates to .cleo/issue-templates.json. | | [`validateLabelsExist()`](/packages/core/api/index#validatelabelsexist) | function | Validate that labels referenced in issue templates are consistent. Collects... | | [`buildIssueBody()`](/packages/core/api/index#buildissuebody) | function | Build structured issue body with template sections. | | [`checkGhCli()`](/packages/core/api/index#checkghcli) | function | Check that gh CLI is installed and authenticated. | | [`addIssue()`](/packages/core/api/index#addissue) | function | Add a GitHub issue for a given type (bug, feature, help). Returns structured... | | [`withRetry()`](/packages/core/api/index#withretry) | function | Execute an async function with automatic retry and exponential backoff. | | [`computeDelay()`](/packages/core/api/index#computedelay) | function | Compute the wait time before the next attempt. | | [`applyTemporalDecay()`](/packages/core/api/index#applytemporaldecay) | function | Apply temporal decay to brain\_learnings confidence values. Entries older tha... | | [`consolidateMemories()`](/packages/core/api/index#consolidatememories) | function | Consolidate old observations by keyword similarity. Groups observations olde... | | [`migrateBrainData()`](/packages/core/api/index#migratebraindata) | function | Migrate BRAIN memory data from JSONL files to brain.db. Reads: - .cleo/memor... | | [`addResearch()`](/packages/core/api/index#addresearch) | function | Add a research entry. | | [`showResearch()`](/packages/core/api/index#showresearch) | function | Show a specific research entry. | | [`listResearch()`](/packages/core/api/index#listresearch) | function | List research entries with optional filtering. | | [`pendingResearch()`](/packages/core/api/index#pendingresearch) | function | List pending research entries. | | [`linkResearch()`](/packages/core/api/index#linkresearch) | function | Link a research entry to a task. | | [`updateResearch()`](/packages/core/api/index#updateresearch) | function | Update research findings. | | [`statsResearch()`](/packages/core/api/index#statsresearch) | function | Get research statistics. | | [`linksResearch()`](/packages/core/api/index#linksresearch) | function | Get research entries linked to a specific task. | | [`archiveResearch()`](/packages/core/api/index#archiveresearch) | function | Archive old research entries by status. Moves 'complete' entries to an archiv... | | [`readManifest()`](/packages/core/api/index#readmanifest) | function | Read manifest entries from the legacy agent-outputs flat-file (deprecated per ADR-027). | | [`appendManifest()`](/packages/core/api/index#appendmanifest) | function | Append a manifest entry. | | [`queryManifest()`](/packages/core/api/index#querymanifest) | function | Query manifest entries with filtering. | | [`readExtendedManifest()`](/packages/core/api/index#readextendedmanifest) | function | Read all manifest entries as extended entries. | | [`filterManifestEntries()`](/packages/core/api/index#filtermanifestentries) | function | Filter manifest entries by criteria. | | [`showManifestEntry()`](/packages/core/api/index#showmanifestentry) | function | Show a manifest entry by ID with optional file content. | | [`searchManifest()`](/packages/core/api/index#searchmanifest) | function | Search manifest entries by text with relevance scoring. | | [`pendingManifestEntries()`](/packages/core/api/index#pendingmanifestentries) | function | Get pending manifest entries (partial, blocked, or needing followup). | | [`manifestStats()`](/packages/core/api/index#manifeststats) | function | Get manifest-based research statistics. | | [`linkManifestEntry()`](/packages/core/api/index#linkmanifestentry) | function | Link a manifest entry to a task (adds taskId to linked\_tasks array). | | [`appendExtendedManifest()`](/packages/core/api/index#appendextendedmanifest) | function | Append an extended manifest entry. Validates required fields before appending. | | [`archiveManifestEntries()`](/packages/core/api/index#archivemanifestentries) | function | Archive manifest entries older than a date. | | [`findContradictions()`](/packages/core/api/index#findcontradictions) | function | Find manifest entries with overlapping topics but conflicting key\_findings. | | [`findSuperseded()`](/packages/core/api/index#findsuperseded) | function | Identify research entries replaced by newer work on same topic. | | [`readProtocolInjection()`](/packages/core/api/index#readprotocolinjection) | function | Read protocol injection content for a given protocol type. | | [`compactManifest()`](/packages/core/api/index#compactmanifest) | function | Compact the legacy agent-outputs flat-file by removing duplicate/stale entries. | | [`validateManifestEntries()`](/packages/core/api/index#validatemanifestentries) | function | Validate research entries for a task. | | [`ensureMetricsDir()`](/packages/core/api/index#ensuremetricsdir) | function | Ensure metrics directory exists, returning its path. | | [`getCompliancePath()`](/packages/core/api/index#getcompliancepath) | function | Get compliance log path. | | [`getViolationsPath()`](/packages/core/api/index#getviolationspath) | function | Get violations log path. | | [`getSessionsMetricsPath()`](/packages/core/api/index#getsessionsmetricspath) | function | Get sessions metrics log path. | | [`isoTimestamp()`](/packages/core/api/index#isotimestamp) | function | Generate ISO 8601 UTC timestamp. | | [`isoDate()`](/packages/core/api/index#isodate) | function | Generate ISO 8601 date only. | | [`readJsonlFile()`](/packages/core/api/index#readjsonlfile) | function | Read a JSONL file into an array of parsed objects. | | [`getComplianceSummaryBase()`](/packages/core/api/index#getcompliancesummarybase) | function | Get compliance summary from log file. | | [`isOtelEnabled()`](/packages/core/api/index#isotelenabled) | function | Check if OTel telemetry is enabled. | | [`getOtelSetupCommands()`](/packages/core/api/index#getotelsetupcommands) | function | Get environment variable commands for OTel capture setup. | | [`parseTokenMetrics()`](/packages/core/api/index#parsetokenmetrics) | function | Parse OTel token metrics from collected data. | | [`getSessionTokens()`](/packages/core/api/index#getsessiontokens) | function | Get aggregated token counts from OTel data. | | [`recordSessionStart()`](/packages/core/api/index#recordsessionstart) | function | Record token counts at session start. | | [`recordSessionEnd()`](/packages/core/api/index#recordsessionend) | function | Record token counts at session end. | | [`compareSessions()`](/packages/core/api/index#comparesessions) | function | Compare token usage between two sessions. | | [`getTokenStats()`](/packages/core/api/index#gettokenstats) | function | Get statistics about token usage across sessions. | | [`logABEvent()`](/packages/core/api/index#logabevent) | function | Log an A/B test event. | | [`startABTest()`](/packages/core/api/index#startabtest) | function | Start an A/B test session. | | [`endABTest()`](/packages/core/api/index#endabtest) | function | End an A/B test session with summary. | | [`getABTestResults()`](/packages/core/api/index#getabtestresults) | function | Get results for a specific test variant. | | [`listABTests()`](/packages/core/api/index#listabtests) | function | List all A/B tests. | | [`compareABTest()`](/packages/core/api/index#compareabtest) | function | Compare two variants of the same test. | | [`getABTestStats()`](/packages/core/api/index#getabteststats) | function | Get aggregate statistics of all A/B tests. | | [`syncMetricsToGlobal()`](/packages/core/api/index#syncmetricstoglobal) | function | Sync project metrics to global aggregation file. | | [`getProjectComplianceSummary()`](/packages/core/api/index#getprojectcompliancesummary) | function | Get compliance summary for the current project. | | [`getGlobalComplianceSummary()`](/packages/core/api/index#getglobalcompliancesummary) | function | Get compliance summary across all projects. | | [`getComplianceTrend()`](/packages/core/api/index#getcompliancetrend) | function | Get compliance trend over time. | | [`getSkillReliability()`](/packages/core/api/index#getskillreliability) | function | Get reliability stats per skill/agent. | | [`logSessionMetrics()`](/packages/core/api/index#logsessionmetrics) | function | Log session metrics to SESSIONS.jsonl. | | [`getSessionMetricsSummary()`](/packages/core/api/index#getsessionmetricssummary) | function | Get summary of session metrics. | | [`isValidEnumValue()`](/packages/core/api/index#isvalidenumvalue) | function | Validate that a value is a member of a given enum. | | [`estimateTokens()`](/packages/core/api/index#estimatetokens) | function | Estimate token count from text. \~4 characters per token. | | [`estimateTokensFromFile()`](/packages/core/api/index#estimatetokensfromfile) | function | Estimate token count from a file. | | [`logTokenEvent()`](/packages/core/api/index#logtokenevent) | function | Log a token usage event to the JSONL file. | | [`trackFileRead()`](/packages/core/api/index#trackfileread) | function | Track a file read with token estimate. | | [`trackManifestQuery()`](/packages/core/api/index#trackmanifestquery) | function | Track a manifest query (partial read). | | [`trackSkillInjection()`](/packages/core/api/index#trackskillinjection) | function | Track skill injection with tokens. | | [`trackPromptBuild()`](/packages/core/api/index#trackpromptbuild) | function | Track final prompt size. | | [`trackSpawnOutput()`](/packages/core/api/index#trackspawnoutput) | function | Track subagent output tokens. | | [`trackSpawnComplete()`](/packages/core/api/index#trackspawncomplete) | function | Track complete spawn cycle (prompt + output). | | [`startTokenSession()`](/packages/core/api/index#starttokensession) | function | Start tracking tokens for a session. | | [`endTokenSession()`](/packages/core/api/index#endtokensession) | function | End token tracking session with summary. | | [`getTokenSummary()`](/packages/core/api/index#gettokensummary) | function | Get token usage summary for a time period. | | [`compareManifestVsFull()`](/packages/core/api/index#comparemanifestvsfull) | function | Compare manifest vs full file token usage strategies. | | [`getTrackingStatus()`](/packages/core/api/index#gettrackingstatus) | function | Get tracking status. | | [`computeChecksum()`](/packages/core/api/index#computechecksum) | function | Compute SHA-256 checksum of a file. | | [`verifyBackup()`](/packages/core/api/index#verifybackup) | function | Verify that a backup file matches the source file and is a valid SQLite datab... | | [`compareChecksums()`](/packages/core/api/index#comparechecksums) | function | Quick checksum comparison without SQLite verification. Use when you only need... | | [`MigrationLogger`](/packages/core/api/index#migrationlogger) | class | Structured logger for migration operations | | [`createMigrationLogger()`](/packages/core/api/index#createmigrationlogger) | function | Create a migration logger for the given cleo directory. Convenience function... | | [`readMigrationLog()`](/packages/core/api/index#readmigrationlog) | function | Read and parse a migration log file. | | [`logFileExists()`](/packages/core/api/index#logfileexists) | function | Check if a log file exists and is readable. | | [`getLatestMigrationLog()`](/packages/core/api/index#getlatestmigrationlog) | function | Get the most recent migration log file for a cleo directory. | | [`checkStorageMigration()`](/packages/core/api/index#checkstoragemigration) | function | Check whether legacy JSON data needs to be migrated to SQLite. Returns a dia... | | [`createMigrationState()`](/packages/core/api/index#createmigrationstate) | function | Create initial migration state at the start of migration. Captures source fi... | | [`updateMigrationState()`](/packages/core/api/index#updatemigrationstate) | function | Update migration state with partial updates. Merges updates with existing st... | | [`updateMigrationPhase()`](/packages/core/api/index#updatemigrationphase) | function | Update just the migration phase. Convenience wrapper for common phase transit... | | [`updateMigrationProgress()`](/packages/core/api/index#updatemigrationprogress) | function | Update progress counters during import. | | [`addMigrationError()`](/packages/core/api/index#addmigrationerror) | function | Add an error to the migration state. | | [`addMigrationWarning()`](/packages/core/api/index#addmigrationwarning) | function | Add a warning to the migration state. | | [`loadMigrationState()`](/packages/core/api/index#loadmigrationstate) | function | Load existing migration state. | | [`isMigrationInProgress()`](/packages/core/api/index#ismigrationinprogress) | function | Check if a migration is in progress. | | [`canResumeMigration()`](/packages/core/api/index#canresumemigration) | function | Check if migration can be resumed. | | [`completeMigration()`](/packages/core/api/index#completemigration) | function | Mark migration as complete. | | [`failMigration()`](/packages/core/api/index#failmigration) | function | Mark migration as failed with error details. | | [`clearMigrationState()`](/packages/core/api/index#clearmigrationstate) | function | Clear migration state file. Safe to call even if state doesn't exist. | | [`getMigrationSummary()`](/packages/core/api/index#getmigrationsummary) | function | Get a summary of migration state for display. | | [`verifySourceIntegrity()`](/packages/core/api/index#verifysourceintegrity) | function | Verify source files haven't changed since migration started. Compares curren... | | [`validateSourceFiles()`](/packages/core/api/index#validatesourcefiles) | function | Validate all JSON source files before migration. This function MUST be calle... | | [`formatValidationResult()`](/packages/core/api/index#formatvalidationresult) | function | Format validation result for human-readable output. | | [`checkTaskCountMismatch()`](/packages/core/api/index#checktaskcountmismatch) | function | Check for task count mismatch between existing database and JSON. This helps... | | [`detectVersion()`](/packages/core/api/index#detectversion) | function | Detect schema version from a data file. T4468 | | [`compareSemver()`](/packages/core/api/index#comparesemver) | function | Compare two version strings (X.Y.Z format, works for both semver and CalVer).... | | [`getMigrationStatus()`](/packages/core/api/index#getmigrationstatus) | function | Get migration status for all data files. T4468 | | [`runMigration()`](/packages/core/api/index#runmigration) | function | Run migrations on a data file. T4468 | | [`runAllMigrations()`](/packages/core/api/index#runallmigrations) | function | Run all pending migrations. T4468 | | [`invalidateGraphCache()`](/packages/core/api/index#invalidategraphcache) | function | Invalidate the in-memory graph cache. | | [`buildGlobalGraph()`](/packages/core/api/index#buildglobalgraph) | function | Build the global dependency graph from all registered projects. Uses checksum... | | [`nexusDeps()`](/packages/core/api/index#nexusdeps) | function | Show dependencies for a task across projects. Supports forward (what this dep... | | [`resolveCrossDeps()`](/packages/core/api/index#resolvecrossdeps) | function | Resolve an array of dependencies (local or cross-project). | | [`criticalPath()`](/packages/core/api/index#criticalpath) | function | Calculate the critical path across project boundaries. Returns the longest de... | | [`blockingAnalysis()`](/packages/core/api/index#blockinganalysis) | function | Analyze the blocking impact of a task across all projects. Uses BFS to find a... | | [`orphanDetection()`](/packages/core/api/index#orphandetection) | function | Detect orphaned cross-project dependencies. Finds tasks with dependency refer... | | [`previewTransfer()`](/packages/core/api/index#previewtransfer) | function | Preview a transfer without writing any data. Validates projects, permissions,... | | [`executeTransfer()`](/packages/core/api/index#executetransfer) | function | Execute a cross-project task transfer. Pipeline: 1. Validate source/target... | | [`compareLevels()`](/packages/core/api/index#comparelevels) | function | Compare two pino levels numerically. Returns negative if a b, 0 if equal, po... | | [`matchesFilter()`](/packages/core/api/index#matchesfilter) | function | Check if a single entry matches the filter criteria. All specified fields mus... | | [`filterEntries()`](/packages/core/api/index#filterentries) | function | Filter an array of parsed log entries against criteria. Returns entries match... | | [`paginate()`](/packages/core/api/index#paginate) | function | Apply pagination (limit/offset) to a result set. | | [`isValidLevel()`](/packages/core/api/index#isvalidlevel) | function | Validate that a string is a valid PinoLevel. | | [`parseLogLine()`](/packages/core/api/index#parselogline) | function | Parse a single JSONL line into a PinoLogEntry. Returns null for empty lines,... | | [`parseLogLines()`](/packages/core/api/index#parseloglines) | function | Parse multiple JSONL lines into PinoLogEntry array. Skips malformed lines. | | [`getProjectLogDir()`](/packages/core/api/index#getprojectlogdir) | function | Get the project log directory path. Uses getLogDir() from logger if available... | | [`getGlobalLogDir()`](/packages/core/api/index#getgloballogdir) | function | Get the global log directory path (\~/.cleo/logs/). | | [`discoverLogFiles()`](/packages/core/api/index#discoverlogfiles) | function | Discover all log files in the specified scope. Returns file info sorted by da... | | [`readLogFileLines()`](/packages/core/api/index#readlogfilelines) | function | Read all lines from a log file synchronously. Returns raw JSON strings (one p... | | [`streamLogFileLines()`](/packages/core/api/index#streamlogfilelines) | function | Create an async iterable over lines of a log file. Suitable for large files -... | | [`queryLogs()`](/packages/core/api/index#querylogs) | function | High-level query: discover files, parse, filter, paginate. Convenience wrappe... | | [`streamLogs()`](/packages/core/api/index#streamlogs) | function | Stream-based query for large log datasets. Yields matching entries one at a t... | | [`getLogSummary()`](/packages/core/api/index#getlogsummary) | function | Get a summary of log activity (counts by level, date range, subsystems). Read... | | [`getOtelStatus()`](/packages/core/api/index#getotelstatus) | function | Get token tracking status. | | [`getOtelSummary()`](/packages/core/api/index#getotelsummary) | function | Get combined token usage summary. | | [`getOtelSessions()`](/packages/core/api/index#getotelsessions) | function | Get session-level token data. | | [`getOtelSpawns()`](/packages/core/api/index#getotelspawns) | function | Get spawn-level token data. | | [`getRealTokenUsage()`](/packages/core/api/index#getrealtokenusage) | function | Get real token usage from Claude Code API. | | [`clearOtelData()`](/packages/core/api/index#clearoteldata) | function | Clear token tracking data with backup. | | [`listPhases()`](/packages/core/api/index#listphases) | function | List all phases with status summaries. T5326 | | [`showPhase()`](/packages/core/api/index#showphase) | function | Show phase details by slug or current phase. T5326 | | [`getCurrentBranch()`](/packages/core/api/index#getcurrentbranch) | function | Get the current branch name in .cleo/.git. T4884 | | [`addRemote()`](/packages/core/api/index#addremote) | function | Add a git remote to .cleo/.git. T4884 | | [`removeRemote()`](/packages/core/api/index#removeremote) | function | Remove a git remote from .cleo/.git. T4884 | | [`listRemotes()`](/packages/core/api/index#listremotes) | function | List configured remotes in .cleo/.git. T4884 | | [`push()`](/packages/core/api/index#push) | function | Push .cleo/.git to a remote. T4884 | | [`pull()`](/packages/core/api/index#pull) | function | Pull from a remote into .cleo/.git. Uses rebase strategy to maintain clean hi... | | [`getSyncStatus()`](/packages/core/api/index#getsyncstatus) | function | Get the sync status between local .cleo/.git and remote. T4884 | | [`getRoadmap()`](/packages/core/api/index#getroadmap) | function | Get roadmap from pending epics and CHANGELOG history. | | [`getOperationMode()`](/packages/core/api/index#getoperationmode) | function | Lookup the execution mode for a specific operation | | [`canRunNatively()`](/packages/core/api/index#canrunnatively) | function | Check if an operation can run natively (without CLI) | | [`requiresCLI()`](/packages/core/api/index#requirescli) | function | Check if an operation requires CLI | | [`getNativeOperations()`](/packages/core/api/index#getnativeoperations) | function | Get all native-capable operations for a domain | | [`generateCapabilityReport()`](/packages/core/api/index#generatecapabilityreport) | function | Generate a capability report for system.doctor | | [`getCapabilityMatrix()`](/packages/core/api/index#getcapabilitymatrix) | function | Get the full capability matrix (for testing/introspection) | | [`findHighestId()`](/packages/core/api/index#findhighestid) | function | Find the highest existing task ID number | | [`generateNextIdFromSet()`](/packages/core/api/index#generatenextidfromset) | function | Generate the next ID given an explicit set of existing IDs. Useful when calle... | | [`isValidTaskId()`](/packages/core/api/index#isvalidtaskid) | function | Validate that a task ID matches the expected format | | [`normalizeTaskId()`](/packages/core/api/index#normalizetaskid) | function | Normalize a task ID input to canonical T#### format. Accepts various loose f... | | [`SecurityError`](/packages/core/api/index#securityerror) | class | Security validation error thrown when input fails sanitization | | [`sanitizeTaskId()`](/packages/core/api/index#sanitizetaskid) | function | Sanitize and validate a task ID | | [`sanitizePath()`](/packages/core/api/index#sanitizepath) | function | Sanitize and validate a file path | | [`sanitizeContent()`](/packages/core/api/index#sanitizecontent) | function | Sanitize content string | | [`validateEnum()`](/packages/core/api/index#validateenum) | function | Validate that a value is in an allowed enum set | | [`RateLimiter`](/packages/core/api/index#ratelimiter) | class | In-memory sliding window rate limiter | | [`ensureArray()`](/packages/core/api/index#ensurearray) | function | Normalize a value to an array of strings. Handles external clients sending co... | | [`sanitizeParams()`](/packages/core/api/index#sanitizeparams) | function | Sanitize all params in a request before routing | | [`getAgentsDir()`](/packages/core/api/index#getagentsdir) | function | Get the agents directory path. T4518 | | [`parseAgentConfig()`](/packages/core/api/index#parseagentconfig) | function | Parse an AGENT.md file into an AgentConfig. AGENT.md uses the same YAML front... | | [`loadAgentConfig()`](/packages/core/api/index#loadagentconfig) | function | Load agent configuration by name. Searches in the agents/ directory. T4518 | | [`getSubagentConfig()`](/packages/core/api/index#getsubagentconfig) | function | Get the cleo-subagent configuration (universal executor). T4518 | | [`agentExists()`](/packages/core/api/index#agentexists) | function | Check if an agent definition exists. T4518 | | [`installAgent()`](/packages/core/api/index#installagent) | function | Install a single agent via symlink. T4518 | | [`installAllAgents()`](/packages/core/api/index#installallagents) | function | Install all agents from the project agents/ directory. T4518 | | [`uninstallAgent()`](/packages/core/api/index#uninstallagent) | function | Uninstall a single agent by removing its symlink. T4518 | | [`getRegistryPath()`](/packages/core/api/index#getregistrypath) | function | Get the agent registry file path. T4518 | | [`readRegistry()`](/packages/core/api/index#readregistry) | function | Read the agent registry, creating if needed. T4518 | | [`saveRegistry()`](/packages/core/api/index#saveregistry) | function | Save the agent registry. T4518 | | [`registerAgent()`](/packages/core/api/index#registeragent) | function | Register an agent in the registry. T4518 | | [`unregisterAgent()`](/packages/core/api/index#unregisteragent) | function | Unregister an agent from the registry. T4518 | | [`getAgent()`](/packages/core/api/index#getagent) | function | Get an agent from the registry by name. T4518 | | [`listAgents()`](/packages/core/api/index#listagents) | function | List all registered agents. T4518 | | [`syncRegistry()`](/packages/core/api/index#syncregistry) | function | Scan the agents/ directory and register all found agents. T4518 | | [`loadProtocolBase()`](/packages/core/api/index#loadprotocolbase) | function | Load the subagent protocol base content. T4521 | | [`buildTaskContext()`](/packages/core/api/index#buildtaskcontext) | function | Build task context block for injection into a subagent prompt. T4521 | | [`filterProtocolByTier()`](/packages/core/api/index#filterprotocolbytier) | function | Filter protocol content by MVI tier. Extracts sections based on !-- TIER:X --... | | [`injectProtocol()`](/packages/core/api/index#injectprotocol) | function | Inject the subagent protocol into skill content. Composes: skill content + pr... | | [`orchestratorSpawnSkill()`](/packages/core/api/index#orchestratorspawnskill) | function | Full orchestrator spawn workflow (skill-based). High-level function that load... | | [`prepareTokenValues()`](/packages/core/api/index#preparetokenvalues) | function | Prepare standard token values for a task spawn. T4521 | | [`installSkill()`](/packages/core/api/index#installskill) | function | Install a single skill via CAAMP. | | [`generateContributionId()`](/packages/core/api/index#generatecontributionid) | function | Generate a unique contribution ID. T4520 | | [`validateContributionTask()`](/packages/core/api/index#validatecontributiontask) | function | Validate that a task is suitable for contribution protocol. T4520 | | [`getContributionInjection()`](/packages/core/api/index#getcontributioninjection) | function | Generate the contribution injection block for a subagent prompt. T4520 | | [`detectConflicts()`](/packages/core/api/index#detectconflicts) | function | Detect conflicts between two sets of decisions. T4520 | | [`computeConsensus()`](/packages/core/api/index#computeconsensus) | function | Compute weighted consensus from multiple agent decisions. T4520 | | [`createContributionManifestEntry()`](/packages/core/api/index#createcontributionmanifestentry) | function | Create a manifest entry for a contribution. T4520 | | [`ensureOutputs()`](/packages/core/api/index#ensureoutputs) | function | Ensure agent outputs directory and manifest file exist. T4520 | | [`readManifest()`](/packages/core/api/index#readmanifest) | function | Read all manifest entries. T4520 | | [`appendManifest()`](/packages/core/api/index#appendmanifest) | function | Append a manifest entry (atomic JSONL append). T4520 | | [`findEntry()`](/packages/core/api/index#findentry) | function | Find a manifest entry by ID. T4520 | | [`filterEntries()`](/packages/core/api/index#filterentries) | function | Filter manifest entries by criteria. T4520 | | [`getPendingFollowup()`](/packages/core/api/index#getpendingfollowup) | function | Get entries with pending follow-ups. T4520 | | [`getFollowupTaskIds()`](/packages/core/api/index#getfollowuptaskids) | function | Get unique follow-up task IDs from all manifest entries. T4520 | | [`taskHasResearch()`](/packages/core/api/index#taskhasresearch) | function | Check if a task has linked research. T4520 | | [`archiveEntry()`](/packages/core/api/index#archiveentry) | function | Archive a manifest entry (move to archive status). T4520 | | [`rotateManifest()`](/packages/core/api/index#rotatemanifest) | function | Rotate manifest by archiving old entries. T4520 | | [`isCacheFresh()`](/packages/core/api/index#iscachefresh) | function | Check if the cached manifest is fresh (within TTL). T4520 | | [`invalidateCache()`](/packages/core/api/index#invalidatecache) | function | Invalidate the cache (delete the cached manifest). T4520 | | [`resolveManifest()`](/packages/core/api/index#resolvemanifest) | function | Resolve the skills manifest. Returns a cached version if fresh, otherwise gen... | | [`regenerateCache()`](/packages/core/api/index#regeneratecache) | function | Force regenerate the cache. T4520 | | [`loadConfig()`](/packages/core/api/index#loadconfig) | function | Load SkillsMP configuration from skillsmp.json. T4521 | | [`searchSkills()`](/packages/core/api/index#searchskills) | function | Search the skills marketplace. Delegates to CAAMP's searchSkills for the actu... | | [`getSkill()`](/packages/core/api/index#getskill) | function | Get a specific skill from the marketplace. Uses CAAMP's MarketplaceClient for... | | [`isEnabled()`](/packages/core/api/index#isenabled) | function | Check if the marketplace is enabled and reachable. T4521 | | [`buildPrompt()`](/packages/core/api/index#buildprompt) | function | Build a fully-resolved prompt for spawning a subagent. T4519 | | [`spawn()`](/packages/core/api/index#spawn) | function | Generate full spawn command with metadata. T4519 | | [`canParallelize()`](/packages/core/api/index#canparallelize) | function | Check if tasks can be spawned in parallel (no inter-dependencies). T4519 | | [`spawnBatch()`](/packages/core/api/index#spawnbatch) | function | Spawn prompts for multiple tasks in a batch. Ports orchestrator\_spawn\_batch f... | | [`getThresholds()`](/packages/core/api/index#getthresholds) | function | Get orchestrator context thresholds from config or defaults. T4519 | | [`getContextState()`](/packages/core/api/index#getcontextstate) | function | Read the current context state from session-aware files. T4519 | | [`sessionInit()`](/packages/core/api/index#sessioninit) | function | Initialize orchestrator session state. Determines the recommended action base... | | [`shouldPause()`](/packages/core/api/index#shouldpause) | function | Check if orchestrator should pause based on context usage. T4519 | | [`analyzeDependencies()`](/packages/core/api/index#analyzedependencies) | function | Analyze dependency graph and compute execution waves. T4519 | | [`getNextTask()`](/packages/core/api/index#getnexttask) | function | Get the next task ready to spawn for an epic. T4519 | | [`getReadyTasks()`](/packages/core/api/index#getreadytasks) | function | Get all tasks ready to spawn in parallel (no inter-dependencies). T4519 | | [`generateHitlSummary()`](/packages/core/api/index#generatehitlsummary) | function | Generate a Human-in-the-Loop summary for session handoff. T4519 | | [`validateSubagentOutput()`](/packages/core/api/index#validatesubagentoutput) | function | Validate a subagent's manifest entry for protocol compliance. T4519 | | [`validateManifestIntegrity()`](/packages/core/api/index#validatemanifestintegrity) | function | Validate the entire manifest file integrity. T4519 | | [`verifyCompliance()`](/packages/core/api/index#verifycompliance) | function | Verify previous agent completed protocol compliance before spawning next. T4519 | | [`validateOrchestratorCompliance()`](/packages/core/api/index#validateorchestratorcompliance) | function | Validate orchestrator compliance (post-hoc behavioral checks). T4519 | | [`getSkillSearchPaths()`](/packages/core/api/index#getskillsearchpaths) | function | Get ordered skill search paths based on configuration. Priority: 1. CLEO\_SKI... | | [`resolveSkillPath()`](/packages/core/api/index#resolveskillpath) | function | Resolve a skill directory containing SKILL.md. Searches all paths from getSki... | | [`resolveProtocolPath()`](/packages/core/api/index#resolveprotocolpath) | function | Resolve a protocol .md file. Search order: 1.... | | [`resolveSharedPath()`](/packages/core/api/index#resolvesharedpath) | function | Resolve a shared resource .md file. Search order per base path:... | | [`getSkillSourceType()`](/packages/core/api/index#getskillsourcetype) | function | Classify the source of a skill directory. Determines where a skill directory... | | [`formatIsoDate()`](/packages/core/api/index#formatisodate) | function | Format a date string in ISO 8601 format. Converts a YYYY-MM-DD date string to... | | [`getCurrentTimestamp()`](/packages/core/api/index#getcurrenttimestamp) | function | Get current timestamp in ISO 8601 format. Returns the current UTC time as an... | | [`isValidIsoDate()`](/packages/core/api/index#isvalidisodate) | function | Validate that a string is a valid ISO 8601 date. T4552 | | [`formatDateYMD()`](/packages/core/api/index#formatdateymd) | function | Format a Date object to a YYYY-MM-DD string. T4552 | | [`validateSkill()`](/packages/core/api/index#validateskill) | function | Validate a skill directory structure and content. T4517 | | [`validateSkills()`](/packages/core/api/index#validateskills) | function | Validate multiple skills at once. T4517 | | [`validateReturnMessage()`](/packages/core/api/index#validatereturnmessage) | function | Validate a return message against protocol-compliant patterns. T4517 | | [`getInstalledVersionAsync()`](/packages/core/api/index#getinstalledversionasync) | function | Get the installed version of a skill from CAAMP lock state. | | [`checkSkillUpdateAsync()`](/packages/core/api/index#checkskillupdateasync) | function | Check if a specific skill needs an update via CAAMP. | | [`checkAllSkillUpdatesAsync()`](/packages/core/api/index#checkallskillupdatesasync) | function | Check all installed skills for available updates via CAAMP. | | [`exportSnapshot()`](/packages/core/api/index#exportsnapshot) | function | Export current task state to a snapshot. T4882 | | [`writeSnapshot()`](/packages/core/api/index#writesnapshot) | function | Write a snapshot to a file. T4882 | | [`readSnapshot()`](/packages/core/api/index#readsnapshot) | function | Read a snapshot from a file. T4882 | | [`getDefaultSnapshotPath()`](/packages/core/api/index#getdefaultsnapshotpath) | function | Generate a default snapshot file path. T4882 | | [`importSnapshot()`](/packages/core/api/index#importsnapshot) | function | Import a snapshot into the local task database. Uses last-write-wins strategy... | | [`SpawnAdapterRegistry`](/packages/core/api/index#spawnadapterregistry) | class | Registry to manage spawn adapters. Maintains mappings between adapter IDs, p... | | [`getProvidersWithSpawnCapability()`](/packages/core/api/index#getproviderswithspawncapability) | function | Get providers by specific spawn capability Queries CAAMP for providers that... | | [`hasParallelSpawnProvider()`](/packages/core/api/index#hasparallelspawnprovider) | function | Check if any provider supports parallel spawn | | [`initializeSpawnAdapters()`](/packages/core/api/index#initializespawnadapters) | function | Initialize spawn adapters dynamically from discovered adapter manifests. Sca... | | [`initializeDefaultAdapters()`](/packages/core/api/index#initializedefaultadapters) | function | Initialize the registry with default adapters. Legacy entry point that disco... | | [`getWorkflowComplianceReport()`](/packages/core/api/index#getworkflowcompliancereport) | function | Compute workflow compliance metrics from existing task, session, and audit da... | | [`getProjectStats()`](/packages/core/api/index#getprojectstats) | function | Get project statistics. | | [`rankBlockedTask()`](/packages/core/api/index#rankblockedtask) | function | Compute a ranking score for a blocked task. Higher score = more urgent = sort... | | [`getDashboard()`](/packages/core/api/index#getdashboard) | function | Get project dashboard data. | | [`getCompletionHistory()`](/packages/core/api/index#getcompletionhistory) | function | Get completion history data. | | [`filterByDate()`](/packages/core/api/index#filterbydate) | function | Filter tasks by date range on archivedAt. | | [`summaryReport()`](/packages/core/api/index#summaryreport) | function | Generate summary statistics. | | [`byPhaseReport()`](/packages/core/api/index#byphasereport) | function | Group tasks by phase with cycle time averages. | | [`byLabelReport()`](/packages/core/api/index#bylabelreport) | function | Group tasks by label frequency. | | [`byPriorityReport()`](/packages/core/api/index#bypriorityreport) | function | Group tasks by priority with cycle time averages. | | [`cycleTimesReport()`](/packages/core/api/index#cycletimesreport) | function | Compute cycle time statistics with distribution buckets. | | [`trendsReport()`](/packages/core/api/index#trendsreport) | function | Compute archive trends by day and month. | | [`analyzeArchive()`](/packages/core/api/index#analyzearchive) | function | Analyze archived tasks and produce a report. This is the primary entry point... | | [`getArchiveStats()`](/packages/core/api/index#getarchivestats) | function | Get archive statistics. | | [`auditData()`](/packages/core/api/index#auditdata) | function | Audit data integrity. | | [`createBackup()`](/packages/core/api/index#createbackup) | function | Create a backup of CLEO data files. | | [`listSystemBackups()`](/packages/core/api/index#listsystembackups) | function | List all available system backups (snapshot, safety, migration types). Reads... | | [`restoreBackup()`](/packages/core/api/index#restorebackup) | function | Restore from a backup. | | [`cleanupSystem()`](/packages/core/api/index#cleanupsystem) | function | Cleanup stale data (sessions, backups, logs). | | [`writeJsonFileAtomic()`](/packages/core/api/index#writejsonfileatomic) | function | Write a JSON file atomically with backup rotation. Pattern: write temp - bac... | | [`readJsonFile()`](/packages/core/api/index#readjsonfile) | function | Read a JSON file, returning parsed content or null if not found. | | [`getDataPath()`](/packages/core/api/index#getdatapath) | function | Get the path to a CLEO data file within a project root. | | [`resolveProjectRoot()`](/packages/core/api/index#resolveprojectroot) | function | Resolve the project root directory. Checks CLEO\_ROOT env, then falls back to... | | [`withLock()`](/packages/core/api/index#withlock) | function | Read and write a JSON file with exclusive locking. Acquires a cross-process... | | [`withFileLock()`](/packages/core/api/index#withfilelock) | function | Acquire a file lock and execute an operation. Unlike withLock, this doesn't r... | | [`withMultiLock()`](/packages/core/api/index#withmultilock) | function | Acquire locks on multiple files in correct order. Used for operations that ne... | | [`isProjectInitialized()`](/packages/core/api/index#isprojectinitialized) | function | Check if a CLEO project directory exists at the given path | | [`listBackups()`](/packages/core/api/index#listbackups) | function | List backup files for a given data file | | [`detectPlatform()`](/packages/core/api/index#detectplatform) | function | Detect the current platform. | | [`commandExists()`](/packages/core/api/index#commandexists) | function | Check if a command exists on PATH. | | [`requireTool()`](/packages/core/api/index#requiretool) | function | Require a tool to be available, returning an error message if missing. | | [`checkRequiredTools()`](/packages/core/api/index#checkrequiredtools) | function | Check all required tools. | | [`getIsoTimestamp()`](/packages/core/api/index#getisotimestamp) | function | Get ISO 8601 UTC timestamp. | | [`isoToEpoch()`](/packages/core/api/index#isotoepoch) | function | Convert ISO timestamp to epoch seconds. | | [`dateDaysAgo()`](/packages/core/api/index#datedaysago) | function | Get ISO date for N days ago. | | [`getFileSize()`](/packages/core/api/index#getfilesize) | function | Get file size in bytes. | | [`getFileMtime()`](/packages/core/api/index#getfilemtime) | function | Get file modification time as ISO string. | | [`generateRandomHex()`](/packages/core/api/index#generaterandomhex) | function | Generate N random hex characters. | | [`sha256()`](/packages/core/api/index#sha256) | function | Compute SHA-256 checksum of a string. | | [`createTempFilePath()`](/packages/core/api/index#createtempfilepath) | function | Create a temporary file path. | | [`getNodeVersionInfo()`](/packages/core/api/index#getnodeversioninfo) | function | Get Node.js version info. | | [`getNodeUpgradeInstructions()`](/packages/core/api/index#getnodeupgradeinstructions) | function | Get platform-specific Node.js upgrade instructions. Returns actionable instal... | | [`getSystemInfo()`](/packages/core/api/index#getsysteminfo) | function | Gather a snapshot of the host system. This is the SSoT for system informatio... | | [`checkCliInstallation()`](/packages/core/api/index#checkcliinstallation) | function | T4525 | | [`checkCliVersion()`](/packages/core/api/index#checkcliversion) | function | T4525 | | [`checkDocsAccessibility()`](/packages/core/api/index#checkdocsaccessibility) | function | T4525 | | [`checkAtReferenceResolution()`](/packages/core/api/index#checkatreferenceresolution) | function | T4525 | | [`checkAgentsMdHub()`](/packages/core/api/index#checkagentsmdhub) | function | Check that AGENTS.md exists in project root and contains the CAAMP:START mark... | | [`checkRootGitignore()`](/packages/core/api/index#checkrootgitignore) | function | Check if project root .gitignore is blocking the entire .cleo/ directory. Thi... | | [`checkCleoGitignore()`](/packages/core/api/index#checkcleogitignore) | function | Check if .cleo/.gitignore exists and matches the template. T4700 | | [`checkVitalFilesTracked()`](/packages/core/api/index#checkvitalfilestracked) | function | Check that vital CLEO configuration files are tracked by git. Only checks con... | | [`checkCoreFilesNotIgnored()`](/packages/core/api/index#checkcorefilesnotignored) | function | Check that core CLEO files are not being ignored by .gitignore. Uses... | | [`checkSqliteNotTracked()`](/packages/core/api/index#checksqlitenottracked) | function | Check that SQLite databases (.cleo/tasks.db) are NOT tracked by project git.... | | [`checkLegacyAgentOutputs()`](/packages/core/api/index#checklegacyagentoutputs) | function | Check if any legacy output directories still exist. Delegates detection to th... | | [`checkCaampMarkerIntegrity()`](/packages/core/api/index#checkcaampmarkerintegrity) | function | Verify balanced CAAMP:START/END markers in CLAUDE.md and AGENTS.md. T5153 | | [`checkAtReferenceTargetExists()`](/packages/core/api/index#checkatreferencetargetexists) | function | Parse references from AGENTS.md CAAMP block and verify each target file exis... | | [`checkTemplateFreshness()`](/packages/core/api/index#checktemplatefreshness) | function | Compare templates/CLEO-INJECTION.md vs \~/.cleo/templates/CLEO-INJECTION.md.... | | [`checkTierMarkersPresent()`](/packages/core/api/index#checktiermarkerspresent) | function | Verify all 3 tier markers exist with matching close tags in deployed template... | | [`checkNodeVersion()`](/packages/core/api/index#checknodeversion) | function | Check that Node.js meets the minimum required version. Provides OS-specific u... | | [`checkGlobalSchemaHealth()`](/packages/core/api/index#checkglobalschemahealth) | function | Check that global schemas at \~/.cleo/schemas/ are installed and not stale. De... | | [`checkNoLocalSchemas()`](/packages/core/api/index#checknolocalschemas) | function | Warn if deprecated .cleo/schemas/ directory still exists in the project. Sche... | | [`checkJsonSchemaIntegrity()`](/packages/core/api/index#checkjsonschemaintegrity) | function | Check that active JSON files (config.json, project-info.json, etc.) are valid... | | [`runAllGlobalChecks()`](/packages/core/api/index#runallglobalchecks) | function | Run all global health checks and return results array. T4525 | | [`calculateHealthStatus()`](/packages/core/api/index#calculatehealthstatus) | function | Calculate overall status from check results. Returns: 0=passed, 50=warning, 5... | | [`getSystemHealth()`](/packages/core/api/index#getsystemhealth) | function | Run system health checks (SQLite-first per ADR-006). | | [`getSystemDiagnostics()`](/packages/core/api/index#getsystemdiagnostics) | function | Run extended diagnostics with fix suggestions. | | [`coreDoctorReport()`](/packages/core/api/index#coredoctorreport) | function | Run comprehensive doctor diagnostics combining dependency checks, directory c... | | [`runDoctorFixes()`](/packages/core/api/index#rundoctorfixes) | function | Run auto-fix for failed doctor checks by calling the corresponding ensure\* fu... | | [`startupHealthCheck()`](/packages/core/api/index#startuphealthcheck) | function | Unified startup health check for CLI entry points. This is the single entry... | | [`generateInjection()`](/packages/core/api/index#generateinjection) | function | Generate Minimum Viable Injection (MVI) markdown. | | [`getLabels()`](/packages/core/api/index#getlabels) | function | Get all labels with counts and task IDs per label. | | [`getSystemMetrics()`](/packages/core/api/index#getsystemmetrics) | function | Get system metrics: token usage, compliance summary, session counts. | | [`getMigrationStatus()`](/packages/core/api/index#getmigrationstatus) | function | Check/report schema migration status. | | [`getRuntimeDiagnostics()`](/packages/core/api/index#getruntimediagnostics) | function | | | [`safestop()`](/packages/core/api/index#safestop) | function | Safe stop: signal clean shutdown for agents. | | [`uncancelTask()`](/packages/core/api/index#uncanceltask) | function | Uncancel a cancelled task (restore to pending). | | [`parseIssueTemplates()`](/packages/core/api/index#parseissuetemplates) | function | Parse all templates from the repo's .github/ISSUE\_TEMPLATE/ directory. Reads... | | [`getTemplateForSubcommand()`](/packages/core/api/index#gettemplateforsubcommand) | function | Get template config for a specific subcommand (bug/feature/help). Performs a... | | [`generateTemplateConfig()`](/packages/core/api/index#generatetemplateconfig) | function | Generate and cache the config as .cleo/issue-templates.json. Performs a live... | | [`validateLabels()`](/packages/core/api/index#validatelabels) | function | Validate that labels exist on a GitHub repo. Compares the template labels ag... | | [`getCurrentShell()`](/packages/core/api/index#getcurrentshell) | function | Detect the current shell. | | [`getRcFilePath()`](/packages/core/api/index#getrcfilepath) | function | Get the RC file path for a shell. | | [`detectAvailableShells()`](/packages/core/api/index#detectavailableshells) | function | Detect which shells are available on the system. | | [`generateBashAliases()`](/packages/core/api/index#generatebashaliases) | function | Generate bash/zsh alias content. | | [`generatePowershellAliases()`](/packages/core/api/index#generatepowershellaliases) | function | Generate PowerShell alias content. | | [`hasAliasBlock()`](/packages/core/api/index#hasaliasblock) | function | Check if aliases are already injected in a file. | | [`getInstalledVersion()`](/packages/core/api/index#getinstalledversion) | function | Get the installed alias version from an RC file. | | [`injectAliases()`](/packages/core/api/index#injectaliases) | function | Inject aliases into a shell RC file. | | [`removeAliases()`](/packages/core/api/index#removealiases) | function | Remove aliases from a shell RC file. | | [`checkAliasesStatus()`](/packages/core/api/index#checkaliasesstatus) | function | Get alias status for the current shell. | | [`discoverReleaseTasks()`](/packages/core/api/index#discoverreleasetasks) | function | Discover task IDs for a release from completed tasks. Optionally filtered by... | | [`groupTasksIntoSections()`](/packages/core/api/index#grouptasksintosections) | function | Group tasks into changelog sections. | | [`generateChangelogMarkdown()`](/packages/core/api/index#generatechangelogmarkdown) | function | Generate changelog markdown for a version. | | [`formatChangelogJson()`](/packages/core/api/index#formatchangelogjson) | function | Format changelog data as JSON. | | [`writeChangelogFile()`](/packages/core/api/index#writechangelogfile) | function | Write changelog content to a file. | | [`appendToChangelog()`](/packages/core/api/index#appendtochangelog) | function | Append a new release section to an existing CHANGELOG.md. | | [`generateChangelog()`](/packages/core/api/index#generatechangelog) | function | Full changelog generation: discover tasks, group, generate, write. | | [`parseCommandHeader()`](/packages/core/api/index#parsecommandheader) | function | Parse a ###CLEO header block from a script file. | | [`scanAllCommands()`](/packages/core/api/index#scanallcommands) | function | Scan a scripts directory and build a command registry. Returns a map of comma... | | [`validateHeader()`](/packages/core/api/index#validateheader) | function | Validate a command header has required fields. | | [`getCommandScriptMap()`](/packages/core/api/index#getcommandscriptmap) | function | Get command-to-script mapping. | | [`getCommandsByCategory()`](/packages/core/api/index#getcommandsbycategory) | function | Group commands by category. | | [`getCommandsByRelevance()`](/packages/core/api/index#getcommandsbyrelevance) | function | Filter commands by relevance level. | | [`defaultFlags()`](/packages/core/api/index#defaultflags) | function | Default flag values. | | [`parseCommonFlags()`](/packages/core/api/index#parsecommonflags) | function | Parse common CLI flags from an argument array. Returns flags and remaining po... | | [`resolveFormat()`](/packages/core/api/index#resolveformat) | function | Resolve output format based on flags and TTY detection. Returns 'json' for no... | | [`isJsonOutput()`](/packages/core/api/index#isjsonoutput) | function | Check if output should be JSON. | | [`checkManifestEntry()`](/packages/core/api/index#checkmanifestentry) | function | Verify a manifest entry for a task has valid required fields. T4524 | | [`checkReturnFormat()`](/packages/core/api/index#checkreturnformat) | function | Check if a response matches the expected return format. T4524 | | [`scoreSubagentCompliance()`](/packages/core/api/index#scoresubagentcompliance) | function | Calculate comprehensive compliance score for a subagent. T4524 | | [`calculateTokenEfficiency()`](/packages/core/api/index#calculatetokenefficiency) | function | Calculate token efficiency metrics. T4524 | | [`calculateOrchestrationOverhead()`](/packages/core/api/index#calculateorchestrationoverhead) | function | Calculate orchestration overhead metrics. T4524 | | [`getScriptCommands()`](/packages/core/api/index#getscriptcommands) | function | Get command names from scripts directory. Returns sorted list of script basen... | | [`getIndexScripts()`](/packages/core/api/index#getindexscripts) | function | Get script names from COMMANDS-INDEX.json. T4527 | | [`getIndexCommands()`](/packages/core/api/index#getindexcommands) | function | Get command names from COMMANDS-INDEX.json. T4527 | | [`checkCommandsSync()`](/packages/core/api/index#checkcommandssync) | function | Check commands index vs scripts directory for sync. T4527 | | [`checkWrapperSync()`](/packages/core/api/index#checkwrappersync) | function | Check wrapper template sync with COMMANDS-INDEX. T4527 | | [`detectDrift()`](/packages/core/api/index#detectdrift) | function | Run full drift detection across scripts, index, wrapper, and README. T4527 | | [`shouldRunDriftDetection()`](/packages/core/api/index#shouldrundriftdetection) | function | Check if drift detection should run automatically based on config. T4527 | | [`getCacheFilePath()`](/packages/core/api/index#getcachefilepath) | function | Get cache file path. T4525 | | [`initCacheFile()`](/packages/core/api/index#initcachefile) | function | Initialize empty cache file. T4525 | | [`loadCache()`](/packages/core/api/index#loadcache) | function | Load cache file or return null if missing/invalid. T4525 | | [`getFileHash()`](/packages/core/api/index#getfilehash) | function | Get file hash for cache invalidation. T4525 | | [`getCachedValidation()`](/packages/core/api/index#getcachedvalidation) | function | Check if project validation is cached and valid. Returns the cache entry if v... | | [`cacheValidationResult()`](/packages/core/api/index#cachevalidationresult) | function | Cache project validation results. T4525 | | [`clearProjectCache()`](/packages/core/api/index#clearprojectcache) | function | Clear cache for a specific project. T4525 | | [`clearEntireCache()`](/packages/core/api/index#clearentirecache) | function | Clear entire cache. T4525 | | [`isTempProject()`](/packages/core/api/index#istempproject) | function | Check if a project path is a temporary/test directory. T4525 | | [`categorizeProjects()`](/packages/core/api/index#categorizeprojects) | function | Filter projects into categories: active, temp, orphaned. T4525 | | [`getProjectCategoryName()`](/packages/core/api/index#getprojectcategoryname) | function | Get human-readable project category name. T4525 | | [`formatProjectHealthSummary()`](/packages/core/api/index#formatprojecthealthsummary) | function | Format project health summary for display. T4525 | | [`getProjectGuidance()`](/packages/core/api/index#getprojectguidance) | function | Get actionable guidance for project issues. T4525 | | [`getUserJourneyStage()`](/packages/core/api/index#getuserjourneystage) | function | Check user journey stage based on system state. T4525 | | [`getJourneyGuidance()`](/packages/core/api/index#getjourneyguidance) | function | Get journey-specific guidance text. T4525 | | [`sanitizeFilePath()`](/packages/core/api/index#sanitizefilepath) | function | Sanitize a file path for safe shell usage. Prevents command injection via mal... | | [`validateTitle()`](/packages/core/api/index#validatetitle) | function | Validate a task title. Checks for emptiness, newlines, invisible characters,... | | [`validateDescription()`](/packages/core/api/index#validatedescription) | function | T4523 | | [`validateNote()`](/packages/core/api/index#validatenote) | function | T4523 | | [`validateBlockedBy()`](/packages/core/api/index#validateblockedby) | function | T4523 | | [`validateSessionNote()`](/packages/core/api/index#validatesessionnote) | function | T4523 | | [`validateCancelReason()`](/packages/core/api/index#validatecancelreason) | function | Validate a cancellation reason. T4523 | | [`validateStatusTransition()`](/packages/core/api/index#validatestatustransition) | function | Validate that a status transition is allowed. T4523 | | [`isValidStatus()`](/packages/core/api/index#isvalidstatus) | function | Check if a status string is valid. T4523 | | [`checkTimestampSanity()`](/packages/core/api/index#checktimestampsanity) | function | Check timestamp format and sanity. T4523 | | [`isMetadataOnlyUpdate()`](/packages/core/api/index#ismetadataonlyupdate) | function | Check if an update contains only metadata fields (safe for done tasks). T4523 | | [`normalizeLabels()`](/packages/core/api/index#normalizelabels) | function | Deduplicate and normalize labels. T4523 | | [`checkIdUniqueness()`](/packages/core/api/index#checkiduniqueness) | function | Check ID uniqueness within and across files. T4523 | | [`validateTask()`](/packages/core/api/index#validatetask) | function | Validate a single task object. T4523 | | [`validateNoCircularDeps()`](/packages/core/api/index#validatenocirculardeps) | function | Check for circular dependencies using DFS. T4523 | | [`validateSingleActivePhase()`](/packages/core/api/index#validatesingleactivephase) | function | Validate only one phase is active. T4523 | | [`validateCurrentPhaseConsistency()`](/packages/core/api/index#validatecurrentphaseconsistency) | function | Validate currentPhase matches an active phase. T4523 | | [`validatePhaseTimestamps()`](/packages/core/api/index#validatephasetimestamps) | function | Validate phase timestamp ordering. T4523 | | [`validatePhaseStatusRequirements()`](/packages/core/api/index#validatephasestatusrequirements) | function | Validate phase status requirements (e.g., active phases must have startedAt).... | | [`validateAll()`](/packages/core/api/index#validateall) | function | Run all validation checks on a TaskFile. T4523 | | [`parseManifest()`](/packages/core/api/index#parsemanifest) | function | Parse a manifest JSONL content string into entries. Skips invalid JSON lines gracefully... | | [`findReviewDocs()`](/packages/core/api/index#findreviewdocs) | function | Find documents in review status. T4524 | | [`extractTopics()`](/packages/core/api/index#extracttopics) | function | Extract markdown headings from file content. T4524 | | [`searchCanonicalCoverage()`](/packages/core/api/index#searchcanonicalcoverage) | function | Search for topic coverage in a docs directory. Returns count of matching file... | | [`analyzeCoverage()`](/packages/core/api/index#analyzecoverage) | function | Analyze documentation coverage for review documents. T4524 | | [`formatGapReport()`](/packages/core/api/index#formatgapreport) | function | Format a gap report for human-readable display. T4524 | | [`findManifestEntry()`](/packages/core/api/index#findmanifestentry) | function | Find a manifest entry for a task ID in a JSONL file. T4526 | | [`validateManifestEntry()`](/packages/core/api/index#validatemanifestentry) | function | Run validation on a manifest entry for a specific task. T4526 | | [`logRealCompliance()`](/packages/core/api/index#logrealcompliance) | function | Log validation results to the compliance JSONL file. T4526 | | [`validateAndLog()`](/packages/core/api/index#validateandlog) | function | Find, validate, and log compliance for a task in one call. T4526 | | [`checkOutputFileExists()`](/packages/core/api/index#checkoutputfileexists) | function | Check if expected output file exists. T4527 | | [`checkDocumentationSections()`](/packages/core/api/index#checkdocumentationsections) | function | Check if file contains required documentation sections. T4527 | | [`checkReturnMessageFormat()`](/packages/core/api/index#checkreturnmessageformat) | function | Check if return message follows protocol format. Expected: " . See MANIFEST.j... | | [`checkManifestFieldPresent()`](/packages/core/api/index#checkmanifestfieldpresent) | function | Check if manifest entry has a required field (non-null, non-empty). T4527 | | [`checkManifestFieldType()`](/packages/core/api/index#checkmanifestfieldtype) | function | Check if manifest field has expected type. T4527 | | [`checkKeyFindingsCount()`](/packages/core/api/index#checkkeyfindingscount) | function | Check if key\_findings array has valid count (3-7). T4527 | | [`checkStatusValid()`](/packages/core/api/index#checkstatusvalid) | function | Check if status is valid enum value. T4527 | | [`checkAgentType()`](/packages/core/api/index#checkagenttype) | function | Check if agent\_type matches expected value. T4527 | | [`checkLinkedTasksPresent()`](/packages/core/api/index#checklinkedtaskspresent) | function | Check if linked\_tasks array contains required task IDs. T4527 | | [`checkProvenanceTags()`](/packages/core/api/index#checkprovenancetags) | function | Check if file contains provenance tag. T4527 | | [`validateCommonManifestRequirements()`](/packages/core/api/index#validatecommonmanifestrequirements) | function | Validate common manifest requirements across all protocols. When protocolTyp... | | [`isValidGateName()`](/packages/core/api/index#isvalidgatename) | function | T4526 | | [`isValidAgentName()`](/packages/core/api/index#isvalidagentname) | function | T4526 | | [`getGateOrder()`](/packages/core/api/index#getgateorder) | function | T4526 | | [`getGateIndex()`](/packages/core/api/index#getgateindex) | function | T4526 | | [`getDownstreamGates()`](/packages/core/api/index#getdownstreamgates) | function | T4526 | | [`initVerification()`](/packages/core/api/index#initverification) | function | Initialize a new verification object with default values. T4526 | | [`computePassed()`](/packages/core/api/index#computepassed) | function | Compute whether verification has passed based on required gates. T4526 | | [`setVerificationPassed()`](/packages/core/api/index#setverificationpassed) | function | Update the passed field on a verification object. T4526 | | [`updateGate()`](/packages/core/api/index#updategate) | function | Update a single gate value. T4526 | | [`resetDownstreamGates()`](/packages/core/api/index#resetdownstreamgates) | function | Reset all downstream gates to null after a gate failure. T4526 | | [`incrementRound()`](/packages/core/api/index#incrementround) | function | Increment the round counter. Returns null if max rounds exceeded. T4526 | | [`logFailure()`](/packages/core/api/index#logfailure) | function | Log a failure to the failureLog array. T4526 | | [`checkAllGatesPassed()`](/packages/core/api/index#checkallgatespassed) | function | Check if all required gates have passed. T4526 | | [`isVerificationComplete()`](/packages/core/api/index#isverificationcomplete) | function | Check if verification is complete (passed = true). T4526 | | [`getVerificationStatus()`](/packages/core/api/index#getverificationstatus) | function | Get verification status for display. T4526 | | [`shouldRequireVerification()`](/packages/core/api/index#shouldrequireverification) | function | Check if a task type should require verification. T4526 | | [`getMissingGates()`](/packages/core/api/index#getmissinggates) | function | Get gate names that are not yet true. T4526 | | [`getGateSummary()`](/packages/core/api/index#getgatesummary) | function | Get gate summary for display. T4526 | | [`checkCircularValidation()`](/packages/core/api/index#checkcircularvalidation) | function | Check for circular validation (self-approval prevention). Prevents: creator v... | | [`allEpicChildrenVerified()`](/packages/core/api/index#allepicchildrenverified) | function | Check if all children of an epic have verification.passed = true. T4526 | | [`allSiblingsVerified()`](/packages/core/api/index#allsiblingsverified) | function | Check if all siblings of a task are verified. T4526 | | [`getProjectInfo()`](/packages/core/api/index#getprojectinfo) | function | Read project-info.json and return a typed ProjectInfo. Falls back gracefully... | | [`getProjectInfoSync()`](/packages/core/api/index#getprojectinfosync) | function | Synchronous variant for use in hot paths where async is not feasible. Returns... | | [`updateProjectName()`](/packages/core/api/index#updateprojectname) | function | Update the project name in project-info.json. Used by `cleo upgrade --name` a... | | [`generateAcFromDescription()`](/packages/core/api/index#generateacfromdescription) | function | Generate 3 baseline acceptance criteria from a task description. Uses simple... | | [`backfillTasks()`](/packages/core/api/index#backfilltasks) | function | Retroactively populate AC and verification metadata for tasks that lack them. | | [`ProtocolEnforcer`](/packages/core/api/index#protocolenforcer) | class | Main protocol enforcement class | | [`getHookCapableProviders()`](/packages/core/api/index#gethookcapableproviders) | function | Get all providers that support a specific hook event | | [`getSharedHookEvents()`](/packages/core/api/index#getsharedhookevents) | function | Get hook events supported by all specified providers | | [`toNativeHookEvent()`](/packages/core/api/index#tonativehookevent) | function | Translate a canonical hook event to a provider-native event name. | | [`toCanonicalHookEvent()`](/packages/core/api/index#tocanonicalhookevent) | function | Translate a provider-native event name back to its canonical equivalent. | | [`providerSupportsHookEvent()`](/packages/core/api/index#providersupportshookevent) | function | Check if a provider supports a specific canonical hook event. | | [`validateChainShape()`](/packages/core/api/index#validatechainshape) | function | Validate the topology/DAG of a chain shape. Checks: - All link source/target... | | [`validateGateSatisfiability()`](/packages/core/api/index#validategatesatisfiability) | function | Validate that all gates in a chain reference valid stages and gate names. Ch... | | [`validateChain()`](/packages/core/api/index#validatechain) | function | Validate a complete WarpChain definition. Orchestrates shape validation and... | | [`addChain()`](/packages/core/api/index#addchain) | function | Store a validated WarpChain definition. Validates the chain before storing.... | | [`showChain()`](/packages/core/api/index#showchain) | function | Retrieve a WarpChain definition by ID. T5403 | | [`listChains()`](/packages/core/api/index#listchains) | function | List all stored WarpChain definitions. T5403 | | [`findChains()`](/packages/core/api/index#findchains) | function | Find WarpChain definitions by criteria. T5403 | | [`createInstance()`](/packages/core/api/index#createinstance) | function | Create a chain instance binding a chain to an epic. T5403 | | [`showInstance()`](/packages/core/api/index#showinstance) | function | Retrieve a chain instance by ID. T5403 | | [`listInstanceGateResults()`](/packages/core/api/index#listinstancegateresults) | function | Read persisted gate results for a chain instance. | | [`advanceInstance()`](/packages/core/api/index#advanceinstance) | function | Advance a chain instance to the next stage, recording gate results. T5403 | | [`validateResearchProtocol()`](/packages/core/api/index#validateresearchprotocol) | function | T4499 | | [`validateConsensusProtocol()`](/packages/core/api/index#validateconsensusprotocol) | function | T4499 | | [`validateSpecificationProtocol()`](/packages/core/api/index#validatespecificationprotocol) | function | T4499 | | [`validateDecompositionProtocol()`](/packages/core/api/index#validatedecompositionprotocol) | function | T4499 | | [`validateImplementationProtocol()`](/packages/core/api/index#validateimplementationprotocol) | function | T4499 | | [`validateContributionProtocol()`](/packages/core/api/index#validatecontributionprotocol) | function | T4499 | | [`validateReleaseProtocol()`](/packages/core/api/index#validatereleaseprotocol) | function | T4499 | | [`validateArtifactPublishProtocol()`](/packages/core/api/index#validateartifactpublishprotocol) | function | T4499 | | [`validateProvenanceProtocol()`](/packages/core/api/index#validateprovenanceprotocol) | function | T4499 | | [`validateArchitectureDecisionProtocol()`](/packages/core/api/index#validatearchitecturedecisionprotocol) | function | Validate an Architecture Decision Record manifest entry. Enforces the 8 MUST... | | [`validateValidationProtocol()`](/packages/core/api/index#validatevalidationprotocol) | function | Validate a manifest entry against the validation stage protocol. Enforces VA... | | [`validateTestingProtocol()`](/packages/core/api/index#validatetestingprotocol) | function | Validate a manifest entry against the testing protocol. This validator is \*\*... | | [`validateProtocol()`](/packages/core/api/index#validateprotocol) | function | Validate a manifest entry against a specific protocol. Throws CleoError with... | | [`buildDefaultChain()`](/packages/core/api/index#builddefaultchain) | function | Build the canonical 9-stage RCASD-IVTR+C WarpChain. - Each PIPELINE\_STAGE be... | | [`buildDefaultTessera()`](/packages/core/api/index#builddefaulttessera) | function | Build the default RCASD Tessera template. Wraps buildDefaultChain() with tem... | | [`instantiateTessera()`](/packages/core/api/index#instantiatetessera) | function | Instantiate a Tessera template into a concrete WarpChainInstance. Steps: 1.... | | [`listTesseraTemplates()`](/packages/core/api/index#listtesseratemplates) | function | List all registered Tessera templates. T5409 | | [`showTessera()`](/packages/core/api/index#showtessera) | function | Find a Tessera template by ID. T5409 | | [`runBrainMaintenance()`](/packages/core/api/index#runbrainmaintenance) | function | Run a combined brain maintenance pass: decay, consolidation, and embeddings.... | | [`migrateClaudeMem()`](/packages/core/api/index#migrateclaudemem) | function | Migrate observations from claude-mem's SQLite database into CLEO brain.db. R... | | [`reasonWhy()`](/packages/core/api/index#reasonwhy) | function | Build a causal trace for why a task is blocked. Walks upstream through... | | [`reasonSimilar()`](/packages/core/api/index#reasonsimilar) | function | Find entries similar to a given brain.db entry. 1. Loads the source entry's... | | [`memoryShow()`](/packages/core/api/index#memoryshow) | function | Look up a brain.db entry by ID. | | [`memoryBrainStats()`](/packages/core/api/index#memorybrainstats) | function | Aggregate stats from brain.db across all tables. | | [`memoryDecisionFind()`](/packages/core/api/index#memorydecisionfind) | function | Search decisions in brain.db. | | [`memoryDecisionStore()`](/packages/core/api/index#memorydecisionstore) | function | Store a decision to brain.db. | | [`memoryFind()`](/packages/core/api/index#memoryfind) | function | Token-efficient brain search returning compact results. | | [`memoryTimeline()`](/packages/core/api/index#memorytimeline) | function | Chronological context around a brain entry anchor. | | [`memoryFetch()`](/packages/core/api/index#memoryfetch) | function | Batch fetch brain entries by IDs. | | [`memoryObserve()`](/packages/core/api/index#memoryobserve) | function | Save an observation to brain.db. | | [`memoryPatternStore()`](/packages/core/api/index#memorypatternstore) | function | Store a pattern to BRAIN memory. | | [`memoryPatternFind()`](/packages/core/api/index#memorypatternfind) | function | Search patterns in BRAIN memory. | | [`memoryPatternStats()`](/packages/core/api/index#memorypatternstats) | function | Get pattern memory statistics. | | [`memoryLearningStore()`](/packages/core/api/index#memorylearningstore) | function | Store a learning to BRAIN memory. | | [`memoryLearningFind()`](/packages/core/api/index#memorylearningfind) | function | Search learnings in BRAIN memory. | | [`memoryLearningStats()`](/packages/core/api/index#memorylearningstats) | function | Get learning memory statistics. | | [`memoryContradictions()`](/packages/core/api/index#memorycontradictions) | function | Find contradictory entries in brain.db. | | [`memorySuperseded()`](/packages/core/api/index#memorysuperseded) | function | Find superseded entries in brain.db. Identifies entries that have been super... | | [`memoryLink()`](/packages/core/api/index#memorylink) | function | Link a brain entry to a task. | | [`memoryUnlink()`](/packages/core/api/index#memoryunlink) | function | Remove a link between a brain entry and a task. | | [`memoryGraphAdd()`](/packages/core/api/index#memorygraphadd) | function | Add a node or edge to the PageIndex graph. | | [`memoryGraphShow()`](/packages/core/api/index#memorygraphshow) | function | Get a node and its edges from the PageIndex graph. | | [`memoryGraphNeighbors()`](/packages/core/api/index#memorygraphneighbors) | function | Get neighbor nodes from the PageIndex graph. | | [`memoryReasonWhy()`](/packages/core/api/index#memoryreasonwhy) | function | Causal trace through task dependency chains. | | [`memoryReasonSimilar()`](/packages/core/api/index#memoryreasonsimilar) | function | Find semantically similar entries. | | [`memorySearchHybrid()`](/packages/core/api/index#memorysearchhybrid) | function | Hybrid search across FTS5, vector, and graph. | | [`memoryGraphRemove()`](/packages/core/api/index#memorygraphremove) | function | Remove a node or edge from the PageIndex graph. | | [`pipelineManifestShow()`](/packages/core/api/index#pipelinemanifestshow) | function | pipeline.manifest.show - Get manifest entry details by ID | | [`pipelineManifestList()`](/packages/core/api/index#pipelinemanifestlist) | function | pipeline.manifest.list - List manifest entries with filters | | [`pipelineManifestFind()`](/packages/core/api/index#pipelinemanifestfind) | function | pipeline.manifest.find - Find manifest entries by text (LIKE search on conten... | | [`pipelineManifestPending()`](/packages/core/api/index#pipelinemanifestpending) | function | pipeline.manifest.pending - Get pending manifest items | | [`pipelineManifestStats()`](/packages/core/api/index#pipelinemanifeststats) | function | pipeline.manifest.stats - Manifest statistics | | [`pipelineManifestRead()`](/packages/core/api/index#pipelinemanifestread) | function | pipeline.manifest.read - Read manifest entries with optional filter | | [`pipelineManifestAppend()`](/packages/core/api/index#pipelinemanifestappend) | function | pipeline.manifest.append - Append entry to pipeline\_manifest table | | [`pipelineManifestArchive()`](/packages/core/api/index#pipelinemanifestarchive) | function | pipeline.manifest.archive - Archive old manifest entries by date | | [`pipelineManifestCompact()`](/packages/core/api/index#pipelinemanifestcompact) | function | pipeline.manifest.compact - Dedup by contentHash (keep newest by createdAt) | | [`pipelineManifestValidate()`](/packages/core/api/index#pipelinemanifestvalidate) | function | pipeline.manifest.validate - Validate manifest entries for a task | | [`pipelineManifestContradictions()`](/packages/core/api/index#pipelinemanifestcontradictions) | function | pipeline.manifest.contradictions - Find entries with overlapping topics but c... | | [`pipelineManifestSuperseded()`](/packages/core/api/index#pipelinemanifestsuperseded) | function | pipeline.manifest.superseded - Identify entries replaced by newer work on sam... | | [`pipelineManifestLink()`](/packages/core/api/index#pipelinemanifestlink) | function | pipeline.manifest.link - Link manifest entry to a task | | [`readManifestEntries()`](/packages/core/api/index#readmanifestentries) | function | Read all manifest entries from the pipeline\_manifest table. Replaces readMani... | | [`filterEntries()`](/packages/core/api/index#filterentries) | function | Filter manifest entries by criteria (alias for backward compatibility). | | [`distillManifestEntry()`](/packages/core/api/index#distillmanifestentry) | function | Distill a manifest entry to brain.db observation (Phase 3, pending). | | [`migrateManifestJsonlToSqlite()`](/packages/core/api/index#migratemanifestjsonltosqlite) | function | Migrate existing legacy flat-file entries into the pipeline\_manifest table... | | [`resolveProviderFromModelIndex()`](/packages/core/api/index#resolveproviderfrommodelindex) | function | | | [`resolveProviderFromModelRegistry()`](/packages/core/api/index#resolveproviderfrommodelregistry) | function | | | [`resetModelsDevCache()`](/packages/core/api/index#resetmodelsdevcache) | function | | | [`measureTokenExchange()`](/packages/core/api/index#measuretokenexchange) | function | | | [`recordTokenExchange()`](/packages/core/api/index#recordtokenexchange) | function | | | [`showTokenUsage()`](/packages/core/api/index#showtokenusage) | function | | | [`listTokenUsage()`](/packages/core/api/index#listtokenusage) | function | | | [`summarizeTokenUsage()`](/packages/core/api/index#summarizetokenusage) | function | | | [`deleteTokenUsage()`](/packages/core/api/index#deletetokenusage) | function | | | [`clearTokenUsage()`](/packages/core/api/index#cleartokenusage) | function | | | [`autoRecordDispatchTokenUsage()`](/packages/core/api/index#autorecorddispatchtokenusage) | function | | | [`getLatestTokenRecord()`](/packages/core/api/index#getlatesttokenrecord) | function | | | [`getTokenUsageAggregateSql()`](/packages/core/api/index#gettokenusageaggregatesql) | function | | | [`startParallelExecution()`](/packages/core/api/index#startparallelexecution) | function | Start parallel execution for a wave. | | [`endParallelExecution()`](/packages/core/api/index#endparallelexecution) | function | End parallel execution for a wave. | | [`getParallelStatus()`](/packages/core/api/index#getparallelstatus) | function | Get current parallel execution state. | | [`listSkills()`](/packages/core/api/index#listskills) | function | List available skills from canonical and project-local directories. | | [`getSkillContent()`](/packages/core/api/index#getskillcontent) | function | Read skill content for injection into agent context. Checks project-local ski... | | [`getUnblockOpportunities()`](/packages/core/api/index#getunblockopportunities) | function | Analyze dependency graph for unblocking opportunities. | | [`validateSpawnReadiness()`](/packages/core/api/index#validatespawnreadiness) | function | Validate spawn readiness for a task. | | [`injectContext()`](/packages/core/api/index#injectcontext) | function | Read protocol injection content for a given protocol type. Core logic for ses... | | [`generateSessionId()`](/packages/core/api/index#generatesessionid) | function | Generate a canonical session ID. Format: ses\_YYYYMMDDHHmmss\_6hex Example: se... | | [`isValidSessionId()`](/packages/core/api/index#isvalidsessionid) | function | Check if a string is a valid session ID (any format). | | [`isCanonicalSessionId()`](/packages/core/api/index#iscanonicalsessionid) | function | Check if a session ID uses the canonical format. | | [`extractSessionTimestamp()`](/packages/core/api/index#extractsessiontimestamp) | function | Extract an approximate timestamp from any valid session ID format. Returns nu... | | [`createSession()`](/packages/core/api/index#createsession) | function | Create a new session. | | [`getSession()`](/packages/core/api/index#getsession) | function | Get a session by ID. | | [`updateSession()`](/packages/core/api/index#updatesession) | function | Update a session. | | [`listSessions()`](/packages/core/api/index#listsessions) | function | List sessions with optional filters. | | [`endSession()`](/packages/core/api/index#endsession) | function | End a session. | | [`startTask()`](/packages/core/api/index#starttask) | function | Start working on a task within a session. | | [`getCurrentTask()`](/packages/core/api/index#getcurrenttask) | function | Get current task for a session. | | [`stopTask()`](/packages/core/api/index#stoptask) | function | Stop working on the current task for a session. | | [`workHistory()`](/packages/core/api/index#workhistory) | function | Get work history for a session. | | [`gcSessions()`](/packages/core/api/index#gcsessions) | function | Garbage collect old sessions (mark ended sessions as orphaned after threshold). | | [`getActiveSession()`](/packages/core/api/index#getactivesession) | function | Get the currently active session (if any). | | [`suggestRelated()`](/packages/core/api/index#suggestrelated) | function | Suggest related tasks based on shared attributes. | | [`addRelation()`](/packages/core/api/index#addrelation) | function | Add a relation between tasks. | | [`discoverRelated()`](/packages/core/api/index#discoverrelated) | function | Discover related tasks using various methods. | | [`listRelations()`](/packages/core/api/index#listrelations) | function | List existing relations for a task. | | [`canCancel()`](/packages/core/api/index#cancancel) | function | Check if a task can be cancelled. | | [`cancelTask()`](/packages/core/api/index#canceltask) | function | Cancel a task in the tasks array (returns updated array). Does NOT handle chi... | | [`cancelMultiple()`](/packages/core/api/index#cancelmultiple) | function | Batch cancel multiple tasks. | | [`coreTaskNext()`](/packages/core/api/index#coretasknext) | function | Suggest next task to work on based on priority, phase, age, and deps. | | [`coreTaskBlockers()`](/packages/core/api/index#coretaskblockers) | function | Show blocked tasks and analyze blocking chains. | | [`coreTaskTree()`](/packages/core/api/index#coretasktree) | function | Build hierarchy tree for tasks. | | [`coreTaskDeps()`](/packages/core/api/index#coretaskdeps) | function | Show dependencies for a task. | | [`coreTaskRelates()`](/packages/core/api/index#coretaskrelates) | function | Show task relations. | | [`coreTaskRelatesAdd()`](/packages/core/api/index#coretaskrelatesadd) | function | Add a relation between two tasks. | | [`coreTaskAnalyze()`](/packages/core/api/index#coretaskanalyze) | function | Analyze tasks for priority and leverage. | | [`coreTaskRestore()`](/packages/core/api/index#coretaskrestore) | function | Restore a cancelled task back to pending. | | [`coreTaskCancel()`](/packages/core/api/index#coretaskcancel) | function | Cancel a task (sets status to 'cancelled', a soft terminal state). Use restor... | | [`coreTaskUnarchive()`](/packages/core/api/index#coretaskunarchive) | function | Move an archived task back to active tasks. | | [`coreTaskReorder()`](/packages/core/api/index#coretaskreorder) | function | Change task position within its sibling group. | | [`coreTaskReparent()`](/packages/core/api/index#coretaskreparent) | function | Move task under a different parent. | | [`coreTaskPromote()`](/packages/core/api/index#coretaskpromote) | function | Promote a subtask to task or task to root. | | [`coreTaskReopen()`](/packages/core/api/index#coretaskreopen) | function | Reopen a completed task. | | [`coreTaskComplexityEstimate()`](/packages/core/api/index#coretaskcomplexityestimate) | function | Deterministic complexity scoring from task metadata. | | [`coreTaskDepsOverview()`](/packages/core/api/index#coretaskdepsoverview) | function | Overview of all dependencies across the project. | | [`coreTaskDepsCycles()`](/packages/core/api/index#coretaskdepscycles) | function | Detect circular dependencies across the project. | | [`coreTaskDepends()`](/packages/core/api/index#coretaskdepends) | function | List dependencies for a task in a given direction. | | [`coreTaskStats()`](/packages/core/api/index#coretaskstats) | function | Compute task statistics. | | [`coreTaskExport()`](/packages/core/api/index#coretaskexport) | function | Export tasks as JSON or CSV. | | [`coreTaskHistory()`](/packages/core/api/index#coretaskhistory) | function | Get task history from the audit log. | | [`coreTaskLint()`](/packages/core/api/index#coretasklint) | function | Lint tasks for common issues. | | [`coreTaskBatchValidate()`](/packages/core/api/index#coretaskbatchvalidate) | function | Validate multiple tasks at once. | | [`coreTaskImport()`](/packages/core/api/index#coretaskimport) | function | Import tasks from a JSON source string. | | [`analyzeTaskPriority()`](/packages/core/api/index#analyzetaskpriority) | function | Analyze task priority with leverage scoring. | | [`listLabels()`](/packages/core/api/index#listlabels) | function | List all labels with task counts. | | [`showLabelTasks()`](/packages/core/api/index#showlabeltasks) | function | Show tasks with a specific label. | | [`getLabelStats()`](/packages/core/api/index#getlabelstats) | function | Get detailed label statistics. | | [`createStoreProvider()`](/packages/core/api/index#createstoreprovider) | function | Create a store provider. Always creates SQLite provider (ADR-006). T4647 | | [`getStore()`](/packages/core/api/index#getstore) | function | Get a StoreProvider instance for the given working directory. Convenience wra... | | [`countJsonRecords()`](/packages/core/api/index#countjsonrecords) | function | Count records in JSON source files. | | [`migrateJsonToSqliteAtomic()`](/packages/core/api/index#migratejsontosqliteatomic) | function | Migrate JSON data to SQLite with atomic rename pattern. Writes to a temporary... | | [`migrateJsonToSqlite()`](/packages/core/api/index#migratejsontosqlite) | function | | | [`exportToJson()`](/packages/core/api/index#exporttojson) | function | Export SQLite data back to JSON format (for inspection or emergency recovery). | | [`repairMissingSizes()`](/packages/core/api/index#repairmissingsizes) | function | Set size='medium' on tasks that have no size value. Operates directly on the... | | [`repairMissingCompletedAt()`](/packages/core/api/index#repairmissingcompletedat) | function | Set completedAt=now() on done/cancelled tasks that are missing a completedAt... | | [`repairMissingColumns()`](/packages/core/api/index#repairmissingcolumns) | function | Detect and add missing required columns on the tasks table. Uses PRAGMA table... | | [`runAllRepairs()`](/packages/core/api/index#runallrepairs) | function | Run all repair functions. Returns all actions taken (or previewed in dry-run... | | [`runUpgrade()`](/packages/core/api/index#runupgrade) | function | Run a full upgrade pass on the project .cleo/ directory. Steps: 1. Pre-fli... | | [`diagnoseUpgrade()`](/packages/core/api/index#diagnoseupgrade) | function | Deep diagnostic inspection of schema and migration state. Unlike bare... | | [`VerificationGate`](/packages/core/api/index#verificationgate) | class | Main Verification Gate class Orchestrates 4-layer validation and determines... | | [`createVerificationGate()`](/packages/core/api/index#createverificationgate) | function | Factory function for creating verification gates | | [`WorkflowGateTracker`](/packages/core/api/index#workflowgatetracker) | class | WorkflowGateTracker Tracks the status of all 6 workflow verification gates f... | | [`isValidWorkflowGateName()`](/packages/core/api/index#isvalidworkflowgatename) | function | Validate a workflow gate name string | | [`getWorkflowGateDefinition()`](/packages/core/api/index#getworkflowgatedefinition) | function | Get the definition for a workflow gate | | [`validateLayer1Schema()`](/packages/core/api/index#validatelayer1schema) | function | Layer 1: Schema Validation Validates operation parameters against JSON Schem... | | [`validateLayer2Semantic()`](/packages/core/api/index#validatelayer2semantic) | function | Layer 2: Semantic Validation Validates business rules and logical constraints. | | [`validateLayer3Referential()`](/packages/core/api/index#validatelayer3referential) | function | Layer 3: Referential Validation Validates cross-entity references and relati... | | [`validateLayer4Protocol()`](/packages/core/api/index#validatelayer4protocol) | function | Layer 4: Protocol Validation Validates RCASD-IVTR+C lifecycle compliance and... | | [`isFieldRequired()`](/packages/core/api/index#isfieldrequired) | function | Helper to check if a field is required for an operation | | [`validateWorkflowGateName()`](/packages/core/api/index#validateworkflowgatename) | function | Validate a workflow gate name T3141 | | [`validateWorkflowGateStatus()`](/packages/core/api/index#validateworkflowgatestatus) | function | Validate a workflow gate status value per Section 7.3 T3141 | | [`validateWorkflowGateUpdate()`](/packages/core/api/index#validateworkflowgateupdate) | function | Validate a gate update operation. T3141 | | [`buildMcpInputSchema()`](/packages/core/api/index#buildmcpinputschema) | function | Build a JSON Schema `input_schema` object from an `OperationDef`. Algorithm:... | | [`buildCommanderArgs()`](/packages/core/api/index#buildcommanderargs) | function | Split `OperationDef.params` into positional arguments and option flags, suita... | | [`buildCommanderOptionString()`](/packages/core/api/index#buildcommanderoptionstring) | function | Build the Commander option string for a single non-positional ParamDef. Exam... | | [`camelToKebab()`](/packages/core/api/index#cameltokebab) | function | Convert a camelCase string to kebab-case. e.g. 'includeArchive' → 'include-ar... | | [`validateRequiredParamsDef()`](/packages/core/api/index#validaterequiredparamsdef) | function | Validates that all required parameters are present in the request. Returns an... | | [`findManifestEntry()`](/packages/core/api/index#findmanifestentry) | function | Locate the manifest line for a given task ID, reading from the end of the fil... | | [`loadManifestEntryByTaskId()`](/packages/core/api/index#loadmanifestentrybytaskid) | function | Load a manifest entry by task ID from the canonical manifest file. T260 | | [`loadManifestEntryFromFile()`](/packages/core/api/index#loadmanifestentryfromfile) | function | Load a manifest entry from an arbitrary JSON file (used by the `manifest` dis... | | [`throwIfStrictFailed()`](/packages/core/api/index#throwifstrictfailed) | function | Throw a CleoError with the protocol's canonical exit code when strict validat... | | [`validateArchitectureDecisionTask()`](/packages/core/api/index#validatearchitecturedecisiontask) | function | Validate architecture-decision protocol for a task. | | [`checkArchitectureDecisionManifest()`](/packages/core/api/index#checkarchitecturedecisionmanifest) | function | Validate architecture-decision protocol from a manifest file. | | [`validateArtifactPublishTask()`](/packages/core/api/index#validateartifactpublishtask) | function | Validate artifact-publish protocol for a task. | | [`checkArtifactPublishManifest()`](/packages/core/api/index#checkartifactpublishmanifest) | function | Validate artifact-publish protocol from a manifest file. | | [`validateConsensusTask()`](/packages/core/api/index#validateconsensustask) | function | Validate consensus protocol for a task. | | [`checkConsensusManifest()`](/packages/core/api/index#checkconsensusmanifest) | function | Validate consensus protocol from a manifest file. | | [`validateContributionTask()`](/packages/core/api/index#validatecontributiontask) | function | Validate contribution protocol for a task. | | [`checkContributionManifest()`](/packages/core/api/index#checkcontributionmanifest) | function | Validate contribution protocol from a manifest file. | | [`validateDecompositionTask()`](/packages/core/api/index#validatedecompositiontask) | function | Validate decomposition protocol for a task. | | [`checkDecompositionManifest()`](/packages/core/api/index#checkdecompositionmanifest) | function | Validate decomposition protocol from a manifest file. | | [`validateImplementationTask()`](/packages/core/api/index#validateimplementationtask) | function | Validate implementation protocol for a task. | | [`checkImplementationManifest()`](/packages/core/api/index#checkimplementationmanifest) | function | Validate implementation protocol from a manifest file. | | [`validateProvenanceTask()`](/packages/core/api/index#validateprovenancetask) | function | Validate provenance protocol for a task. | | [`checkProvenanceManifest()`](/packages/core/api/index#checkprovenancemanifest) | function | Validate provenance protocol from a manifest file. | | [`validateReleaseTask()`](/packages/core/api/index#validatereleasetask) | function | Validate release protocol for a task. | | [`checkReleaseManifest()`](/packages/core/api/index#checkreleasemanifest) | function | Validate release protocol from a manifest file. | | [`validateResearchTask()`](/packages/core/api/index#validateresearchtask) | function | Validate research protocol for a task. | | [`checkResearchManifest()`](/packages/core/api/index#checkresearchmanifest) | function | Validate research protocol from a manifest file. | | [`validateSpecificationTask()`](/packages/core/api/index#validatespecificationtask) | function | Validate specification protocol for a task. | | [`checkSpecificationManifest()`](/packages/core/api/index#checkspecificationmanifest) | function | Validate specification protocol from a manifest file. | | [`validateTestingTask()`](/packages/core/api/index#validatetestingtask) | function | Validate testing protocol for a task. | | [`checkTestingManifest()`](/packages/core/api/index#checktestingmanifest) | function | Validate testing protocol from a manifest file. | | [`validateValidationTask()`](/packages/core/api/index#validatevalidationtask) | function | Validate validation-stage protocol for a task. | | [`checkValidationManifest()`](/packages/core/api/index#checkvalidationmanifest) | function | Validate validation-stage protocol from a manifest file. | | [`validateSchema()`](/packages/core/api/index#validateschema) | function | Validate data against a CLEO schema | | [`validateTask()`](/packages/core/api/index#validatetask) | function | Validate a single task object against the drizzle-zod insert schema. Uses dri... | | [`clearSchemaCache()`](/packages/core/api/index#clearschemacache) | function | Clear the schema cache (useful for testing) | | [`coreValidateReport()`](/packages/core/api/index#corevalidatereport) | function | Run comprehensive validation report on tasks database — checks business rules... | | [`coreValidateAndFix()`](/packages/core/api/index#corevalidateandfix) | function | Run validation report, then apply data repairs for fixable issues. Calls runA... | | [`coreValidateSchema()`](/packages/core/api/index#corevalidateschema) | function | Validate data against a schema type. For SQLite-backed types (todo, archive,... | | [`coreValidateTask()`](/packages/core/api/index#corevalidatetask) | function | Validate a single task against anti-hallucination rules. T4786 | | [`coreValidateProtocol()`](/packages/core/api/index#corevalidateprotocol) | function | Check basic protocol compliance for a task. T4786 | | [`coreValidateManifest()`](/packages/core/api/index#corevalidatemanifest) | function | Validate manifest JSONL entries for required fields. T4786 | | [`coreValidateOutput()`](/packages/core/api/index#corevalidateoutput) | function | Validate an output file for required sections. T4786 | | [`coreComplianceSummary()`](/packages/core/api/index#corecompliancesummary) | function | Get aggregated compliance metrics. T4786 | | [`coreComplianceViolations()`](/packages/core/api/index#corecomplianceviolations) | function | List compliance violations. T4786 | | [`coreComplianceRecord()`](/packages/core/api/index#corecompliancerecord) | function | Record a compliance check result to COMPLIANCE.jsonl. T4786 | | [`coreTestStatus()`](/packages/core/api/index#coreteststatus) | function | Check test suite availability. T4786 | | [`coreCoherenceCheck()`](/packages/core/api/index#corecoherencecheck) | function | Cross-validate task graph for consistency. T4786 | | [`coreTestRun()`](/packages/core/api/index#coretestrun) | function | Execute test suite via subprocess. T4786 | | [`coreBatchValidate()`](/packages/core/api/index#corebatchvalidate) | function | Batch validate all tasks against schema and rules. T4786 | | [`coreTestCoverage()`](/packages/core/api/index#coretestcoverage) | function | Get test coverage metrics. T4786 | | [`buildBrainState()`](/packages/core/api/index#buildbrainstate) | function | Build brain state for agent bootstrapping. | | [`getCriticalPath()`](/packages/core/api/index#getcriticalpath) | function | Find the critical path (longest dependency chain) in the task graph. | | [`resolveSkillPathsForProvider()`](/packages/core/api/index#resolveskillpathsforprovider) | function | Get effective skill paths for a provider considering precedence | | [`getProvidersWithPrecedence()`](/packages/core/api/index#getproviderswithprecedence) | function | Get all providers that use a specific precedence mode | | [`getSkillsMapWithPrecedence()`](/packages/core/api/index#getskillsmapwithprecedence) | function | Build complete skills map with precedence information | | [`determineInstallationTargets()`](/packages/core/api/index#determineinstallationtargets) | function | Determine target installation paths for a skill | | [`supportsAgentsPath()`](/packages/core/api/index#supportsagentspath) | function | Check if provider supports agents path | | [`coreTaskPlan()`](/packages/core/api/index#coretaskplan) | function | Build composite planning view. T4914 | | [`encrypt()`](/packages/core/api/index#encrypt) | function | Encrypt a plaintext string using AES-256-GCM with a per-project key. Output... | | [`decrypt()`](/packages/core/api/index#decrypt) | function | Decrypt a base64-encoded ciphertext using AES-256-GCM with a per-project key. | | [`AgentRegistryAccessor`](/packages/core/api/index#agentregistryaccessor) | class | signaldock.db implementation of the AgentRegistryAPI. | | [`buildIndex()`](/packages/core/api/index#buildindex) | function | Scan .cleo/rcasd/ and legacy .cleo/rcsd/ directories and build the RCASD inde... | | [`writeIndex()`](/packages/core/api/index#writeindex) | function | Write RCASD-INDEX.json to disk. | | [`readIndex()`](/packages/core/api/index#readindex) | function | Read RCASD-INDEX.json from disk. | | [`rebuildIndex()`](/packages/core/api/index#rebuildindex) | function | Rebuild and write the index from current disk state. | | [`getTaskAnchor()`](/packages/core/api/index#gettaskanchor) | function | Get task anchor by task ID. | | [`findByStage()`](/packages/core/api/index#findbystage) | function | Find tasks by pipeline stage. | | [`findByStatus()`](/packages/core/api/index#findbystatus) | function | Find tasks by status. | | [`getIndexTotals()`](/packages/core/api/index#getindextotals) | function | Get index summary statistics. | | [`ApprovalManager`](/packages/core/api/index#approvalmanager) | class | Manages approval tokens for CANT workflow gates. Tokens are stored in-memory... | | [`createScope()`](/packages/core/api/index#createscope) | function | Creates a new root execution scope with initial variable bindings. | | [`createChildScope()`](/packages/core/api/index#createchildscope) | function | Creates a child scope that inherits from a parent. Lookups in the child scop... | | [`resolveVariable()`](/packages/core/api/index#resolvevariable) | function | Resolves a variable name in the scope chain. Searches the current scope firs... | | [`setVariable()`](/packages/core/api/index#setvariable) | function | Sets a variable in the current scope (does not affect parent scopes). | | [`resolveTemplate()`](/packages/core/api/index#resolvetemplate) | function | Resolves `{variable}` placeholders in a template string against the scope. P... | | [`mergeStepOutput()`](/packages/core/api/index#mergestepoutput) | function | Merges step output into the current scope. Binds `.stdout`,... | | [`flattenScope()`](/packages/core/api/index#flattenscope) | function | Collects all variable bindings visible from the given scope (including parent... | | [`DefaultDiscretionEvaluator`](/packages/core/api/index#defaultdiscretionevaluator) | class | Default discretion evaluator that always returns `true`. This is a stub impl... | | [`MockDiscretionEvaluator`](/packages/core/api/index#mockdiscretionevaluator) | class | Mock discretion evaluator with configurable responses for testing. Responses... | | [`RateLimitedDiscretionEvaluator`](/packages/core/api/index#ratelimiteddiscretionevaluator) | class | Wraps a discretion evaluator with rate limiting. Enforces a configurable max... | | [`executeParallel()`](/packages/core/api/index#executeparallel) | function | Executes parallel arms according to the specified join strategy. | | [`WorkflowExecutor`](/packages/core/api/index#workflowexecutor) | class | Executes CANT workflow definitions. The executor processes each statement in... | | [`generateCodebaseMapSummary()`](/packages/core/api/index#generatecodebasemapsummary) | function | | | [`sequenceChains()`](/packages/core/api/index#sequencechains) | function | Sequence two chains: connect A's exit points to B's entry point. B's stage I... | | [`parallelChains()`](/packages/core/api/index#parallelchains) | function | Compose chains in parallel with a common fork entry and join stage. Creates... | | [`resolveEpicFromContent()`](/packages/core/api/index#resolveepicfromcontent) | function | Extract an epic/task ID from file content by searching for: 1.... | | [`resolveEpicFromFilename()`](/packages/core/api/index#resolveepicfromfilename) | function | Extract an epic ID from a filename pattern like `T####-*` or `T####_*`. | | [`normalizeDirectoryNames()`](/packages/core/api/index#normalizedirectorynames) | function | Rename suffixed epic directories (e.g. `T4881_install-channels` → `T4881`). | | [`migrateConsensusFiles()`](/packages/core/api/index#migrateconsensusfiles) | function | Migrate `.cleo/consensus/` files to appropriate epic's consensus/ subdirector... | | [`migrateContributionFiles()`](/packages/core/api/index#migratecontributionfiles) | function | Migrate `.cleo/contributions/` files to appropriate epic's contributions/ sub... | | [`migrateLooseFiles()`](/packages/core/api/index#migrateloosefiles) | function | Migrate loose `T####_*.md` files from `.cleo/rcasd/` root into... | | [`consolidateRcasd()`](/packages/core/api/index#consolidatercasd) | function | Consolidate all provenance files into the unified `.cleo/rcasd/{epicId}/` str... | | [`findResumablePipelines()`](/packages/core/api/index#findresumablepipelines) | function | Query active pipelines that can be resumed. Searches the lifecycle\_pipelines... | | [`loadPipelineContext()`](/packages/core/api/index#loadpipelinecontext) | function | Load complete pipeline context for session resume. Uses SQL JOINs to efficie... | | [`resumeStage()`](/packages/core/api/index#resumestage) | function | Resume a specific stage in a pipeline. Updates the stage status from 'blocke... | | [`autoResume()`](/packages/core/api/index#autoresume) | function | Auto-detect where to resume across all active pipelines. Finds the best cand... | | [`checkSessionResume()`](/packages/core/api/index#checksessionresume) | function | Check for resumable work on session start. Integrates with session initializ... | | [`formatResumeSummary()`](/packages/core/api/index#formatresumesummary) | function | Get resume summary for display to user. Formats resumable pipelines into a h... | | [`handleCompletedStage()`](/packages/core/api/index#handlecompletedstage) | function | Handle completed stage edge case. If the current stage is completed, suggest... | | [`handleBlockedStage()`](/packages/core/api/index#handleblockedstage) | function | Handle blocked stage edge case. Provides information about why a stage is bl... | | [`checkBlockedStageDetails()`](/packages/core/api/index#checkblockedstagedetails) | function | Handle blocked stage edge case - async version with database lookup. | | [`checkPrerequisites()`](/packages/core/api/index#checkprerequisites) | function | Check if prerequisites are met for a stage. Validates that all prerequisite... | | [`validateTransition()`](/packages/core/api/index#validatetransition) | function | Validate a stage transition. Comprehensive validation that checks both trans... | | [`executeTransition()`](/packages/core/api/index#executetransition) | function | Execute a state transition. Applies the transition to the state machine cont... | | [`setStageStatus()`](/packages/core/api/index#setstagestatus) | function | Set the status of a stage. Updates stage status with validation of allowed s... | | [`getStageStatus()`](/packages/core/api/index#getstagestatus) | function | Get the status of a stage. | | [`isValidStatusTransition()`](/packages/core/api/index#isvalidstatustransition) | function | Check if a status transition is valid. State transitions: not\_started → in... | | [`createInitialContext()`](/packages/core/api/index#createinitialcontext) | function | Create initial state machine context for a pipeline. | | [`getValidNextStages()`](/packages/core/api/index#getvalidnextstages) | function | Get stages that can be transitioned to from the current stage. | | [`getCurrentStageState()`](/packages/core/api/index#getcurrentstagestate) | function | Get the current stage state. | | [`isTerminalState()`](/packages/core/api/index#isterminalstate) | function | Check if the pipeline is in a terminal state. | | [`isBlocked()`](/packages/core/api/index#isblocked) | function | Check if the pipeline is blocked. | | [`validateTransitions()`](/packages/core/api/index#validatetransitions) | function | Validate multiple transitions. | | [`canSkipStage()`](/packages/core/api/index#canskipstage) | function | Check if a stage can be skipped. | | [`skipStage()`](/packages/core/api/index#skipstage) | function | Skip a stage with validation. | | [`EmbeddingQueue`](/packages/core/api/index#embeddingqueue) | class | Singleton embedding queue. Batches embedding requests and processes them via... | | [`getEmbeddingQueue()`](/packages/core/api/index#getembeddingqueue) | function | Get or create the shared EmbeddingQueue singleton. Registers a process... | | [`resetEmbeddingQueue()`](/packages/core/api/index#resetembeddingqueue) | function | Reset the singleton (for testing only). Shuts down the existing queue before... | | [`getContextStatusFromPercentage()`](/packages/core/api/index#getcontextstatusfrompercentage) | function | Determine status from percentage. | | [`processContextInput()`](/packages/core/api/index#processcontextinput) | function | Process context window input and write state file. Returns the status line st... | | [`isHITLEnabled()`](/packages/core/api/index#ishitlenabled) | function | Check if HITL warnings are enabled. | | [`generateHITLWarnings()`](/packages/core/api/index#generatehitlwarnings) | function | Generate HITL warnings based on lock state. | | [`getHighestLevel()`](/packages/core/api/index#gethighestlevel) | function | Get highest warning level from warnings. | | [`getConcurrencyJson()`](/packages/core/api/index#getconcurrencyjson) | function | Get concurrency data for analyze JSON output. | | [`checkStatuslineIntegration()`](/packages/core/api/index#checkstatuslineintegration) | function | Check if statusline integration is configured. Returns the current integratio... | | [`getStatuslineConfig()`](/packages/core/api/index#getstatuslineconfig) | function | Get the statusline setup command for Claude Code settings. | | [`getSetupInstructions()`](/packages/core/api/index#getsetupinstructions) | function | Get human-readable setup instructions. | | [`getPreferredChannel()`](/packages/core/api/index#getpreferredchannel) | function | Look up the preferred channel for a given domain + operation. Reads from the... | | [`getRoutingForDomain()`](/packages/core/api/index#getroutingfordomain) | function | Get routing entries for a specific domain. Derives entries from the capabili... | | [`getOperationsByChannel()`](/packages/core/api/index#getoperationsbychannel) | function | Get all operations that prefer a specific channel. Derives entries from the... | | [`generateMemoryProtocol()`](/packages/core/api/index#generatememoryprotocol) | function | Generate dynamic memory protocol instructions based on provider capabilities. | | [`generateRoutingGuide()`](/packages/core/api/index#generateroutingguide) | function | Generate a dynamic routing guide based on operation preferences. | | [`generateDynamicSkillContent()`](/packages/core/api/index#generatedynamicskillcontent) | function | Generate complete dynamic skill content for the current provider. | | [`TaskCache`](/packages/core/api/index#taskcache) | class | In-memory cache for task indices with checksum-based staleness detection. | | [`extractPackageMeta()`](/packages/core/api/index#extractpackagemeta) | function | Extract package metadata from an export file. T4552 | | [`logImportStart()`](/packages/core/api/index#logimportstart) | function | Log import operation start with package metadata. T4552 | | [`logImportSuccess()`](/packages/core/api/index#logimportsuccess) | function | Log import operation completion with full metadata. T4552 | | [`logImportError()`](/packages/core/api/index#logimporterror) | function | Log import operation error with diagnostic details. T4552 | | [`logImportConflict()`](/packages/core/api/index#logimportconflict) | function | Log import conflict detection and resolution. T4552 | | [`topologicalSortTasks()`](/packages/core/api/index#topologicalsorttasks) | function | Topological sort for task import order using Kahn's algorithm. Ensures tasks... | | [`detectCycles()`](/packages/core/api/index#detectcycles) | function | Detect cycles in task dependency graph. Returns true if no cycles, false if c... | | [`findActivePipelinesWithStagesAndTasks()`](/packages/core/api/index#findactivepipelineswithstagesandtasks) | function | Find active pipelines joined with their stages and tasks. Optionally filters... | | [`findPipelineWithCurrentStageAndTask()`](/packages/core/api/index#findpipelinewithcurrentstageandtask) | function | Find a pipeline with its current stage and task by taskId. Matches stages whe... | | [`findPipelineWithStage()`](/packages/core/api/index#findpipelinewithstage) | function | Find a pipeline and a specific stage by taskId and stageName. | | [`updatePipelineCurrentStage()`](/packages/core/api/index#updatepipelinecurrentstage) | function | Update pipeline's currentStageId. | | [`getStagesByPipelineId()`](/packages/core/api/index#getstagesbypipelineid) | function | Get all stages for a pipeline, ordered by sequence. | | [`activateStage()`](/packages/core/api/index#activatestage) | function | Update a stage's status to 'in\_progress' and clear block fields. | | [`findPipelineWithCurrentStage()`](/packages/core/api/index#findpipelinewithcurrentstage) | function | Find pipeline with current stage (no task join) by taskId. Used by checkBlock... | | [`getGateResultsByStageId()`](/packages/core/api/index#getgateresultsbystageid) | function | Get gate results for a stage, ordered by checkedAt descending. | | [`getGateResultsByStageIdUnordered()`](/packages/core/api/index#getgateresultsbystageidunordered) | function | Get gate results for a stage without ordering (for simple checks). | | [`getEvidenceByStageId()`](/packages/core/api/index#getevidencebystageid) | function | Get evidence for a stage, ordered by recordedAt descending. | | [`getRecentTransitions()`](/packages/core/api/index#getrecenttransitions) | function | Get recent transitions for a pipeline, ordered by createdAt descending. | | [`insertTransition()`](/packages/core/api/index#inserttransition) | function | Insert a new transition record. | | [`checkAtomicity()`](/packages/core/api/index#checkatomicity) | function | Check task atomicity using 6-point heuristic test. Default threshold: 4 (pass... | | [`extractTaskRefs()`](/packages/core/api/index#extracttaskrefs) | function | Extract task IDs from text content. Scans for patterns like T1234, T001, T42... | | [`createRelatesEntries()`](/packages/core/api/index#createrelatesentries) | function | Create relates entries from extracted task IDs. | | [`mergeRelatesArrays()`](/packages/core/api/index#mergerelatesarrays) | function | Merge new relates entries with existing ones. Existing entries take precedenc... | | [`validateRelatesRefs()`](/packages/core/api/index#validaterelatesrefs) | function | Validate that referenced task IDs exist. Returns array of invalid (non-existe... | | [`extractAndCreateRelates()`](/packages/core/api/index#extractandcreaterelates) | function | Convenience: extract task refs from text and create relates entries. | | [`calculateAffectedTasks()`](/packages/core/api/index#calculateaffectedtasks) | function | Calculate which tasks would be affected by a delete operation. | | [`calculateImpact()`](/packages/core/api/index#calculateimpact) | function | Calculate impact of deletion. | | [`generateWarnings()`](/packages/core/api/index#generatewarnings) | function | Generate warnings based on impact analysis. | | [`previewDelete()`](/packages/core/api/index#previewdelete) | function | Main preview function - coordinates all preview calculations. | | [`isValidStrategy()`](/packages/core/api/index#isvalidstrategy) | function | Validate a strategy name. | | [`handleChildren()`](/packages/core/api/index#handlechildren) | function | Handle children using the specified strategy. Returns the modified tasks arra... | | [`GraphCache`](/packages/core/api/index#graphcache) | class | Graph cache for expensive dependency calculations. Automatically invalidates... | | [`discoverByLabels()`](/packages/core/api/index#discoverbylabels) | function | Discover related tasks by shared labels. | | [`discoverByDescription()`](/packages/core/api/index#discoverbydescription) | function | Discover related tasks by description similarity (keyword-based Jaccard). | | [`discoverByFiles()`](/packages/core/api/index#discoverbyfiles) | function | Discover related tasks by shared files. | | [`discoverByHierarchy()`](/packages/core/api/index#discoverbyhierarchy) | function | Discover related tasks by hierarchical proximity (siblings and cousins). | | [`discoverRelatedTasks()`](/packages/core/api/index#discoverrelatedtasks) | function | Discover related tasks using all methods combined. | | [`suggestRelates()`](/packages/core/api/index#suggestrelates) | function | Suggest relates entries filtered by threshold. | | [`getCurrentPhase()`](/packages/core/api/index#getcurrentphase) | function | Get the current active phase from project metadata. | | [`getTasksByPhase()`](/packages/core/api/index#gettasksbyphase) | function | Get tasks belonging to a specific phase. | | [`calculatePhaseProgress()`](/packages/core/api/index#calculatephaseprogress) | function | Calculate progress for a phase. | | [`getAllPhaseProgress()`](/packages/core/api/index#getallphaseprogress) | function | Get progress for all phases. | | [`validatePhaseTransition()`](/packages/core/api/index#validatephasetransition) | function | | | [`createPhaseTransition()`](/packages/core/api/index#createphasetransition) | function | Create a phase transition record. | | [`applyPhaseTransition()`](/packages/core/api/index#applyphasetransition) | function | Apply a phase transition to project metadata. Returns updated project data. | | [`getNextPhase()`](/packages/core/api/index#getnextphase) | function | Get the next phase in order. | | [`allPhasesComplete()`](/packages/core/api/index#allphasescomplete) | function | Check if all phases are complete. | | [`getSizeWeight()`](/packages/core/api/index#getsizeweight) | function | Get weight for a task size. | | [`getPriorityWeight()`](/packages/core/api/index#getpriorityweight) | function | Get weight for a task priority. | | [`calculateTaskScore()`](/packages/core/api/index#calculatetaskscore) | function | Calculate a composite score for task ordering. Higher score = should be worke... | | [`sortByWeight()`](/packages/core/api/index#sortbyweight) | function | Sort tasks by weighted score (highest first). | | [`calculateTotalEffort()`](/packages/core/api/index#calculatetotaleffort) | function | Calculate total weighted effort for a set of tasks. | | [`calculateWeightedProgress()`](/packages/core/api/index#calculateweightedprogress) | function | Calculate completion percentage by weight. | | [`calculateRemainingEffort()`](/packages/core/api/index#calculateremainingeffort) | function | Estimate remaining effort (weighted sum of non-complete tasks). | | [`getLastActivity()`](/packages/core/api/index#getlastactivity) | function | Get the most recent activity timestamp for a task. | | [`classifyStaleness()`](/packages/core/api/index#classifystaleness) | function | Classify staleness level for a task. | | [`getStalenessInfo()`](/packages/core/api/index#getstalenessinfo) | function | Get staleness info for a single task. | | [`findStaleTasks()`](/packages/core/api/index#findstaletasks) | function | Find all stale tasks (stale, critical, or abandoned). | | [`getStalenessSummary()`](/packages/core/api/index#getstalenesssummary) | function | | ## Types & Interfaces | Symbol | Kind | Description | | ------------------------------------------------------------------------------------------------------- | --------- | --------------------------------------------------------------------------------- | | [`LoggerConfig`](/packages/core/api/index#loggerconfig) | interface | | | [`PlatformPaths`](/packages/core/api/index#platformpaths) | interface | OS-appropriate paths for CLEO's global directories. | | [`SystemInfo`](/packages/core/api/index#systeminfo) | interface | Immutable system information snapshot, captured once per process. | | [`RequiredColumn`](/packages/core/api/index#requiredcolumn) | interface | Required column definition for ensureColumns(). | | [`VacuumOptions`](/packages/core/api/index#vacuumoptions) | interface | | | [`AgentInstanceRow`](/packages/core/api/index#agentinstancerow) | type | | | [`NewAgentInstanceRow`](/packages/core/api/index#newagentinstancerow) | type | | | [`AgentErrorLogRow`](/packages/core/api/index#agenterrorlogrow) | type | | | [`NewAgentErrorLogRow`](/packages/core/api/index#newagenterrorlogrow) | type | | | [`AgentInstanceStatus`](/packages/core/api/index#agentinstancestatus) | type | | | [`AgentType`](/packages/core/api/index#agenttype) | type | | | [`AgentErrorType`](/packages/core/api/index#agenterrortype) | type | | | [`WarpChainRow`](/packages/core/api/index#warpchainrow) | type | | | [`NewWarpChainRow`](/packages/core/api/index#newwarpchainrow) | type | | | [`WarpChainInstanceRow`](/packages/core/api/index#warpchaininstancerow) | type | | | [`NewWarpChainInstanceRow`](/packages/core/api/index#newwarpchaininstancerow) | type | | | [`StatusRegistryRow`](/packages/core/api/index#statusregistryrow) | type | | | [`TaskRow`](/packages/core/api/index#taskrow) | type | | | [`NewTaskRow`](/packages/core/api/index#newtaskrow) | type | | | [`SessionRow`](/packages/core/api/index#sessionrow) | type | | | [`NewSessionRow`](/packages/core/api/index#newsessionrow) | type | | | [`TaskDependencyRow`](/packages/core/api/index#taskdependencyrow) | type | | | [`TaskRelationRow`](/packages/core/api/index#taskrelationrow) | type | | | [`WorkHistoryRow`](/packages/core/api/index#workhistoryrow) | type | | | [`LifecyclePipelineRow`](/packages/core/api/index#lifecyclepipelinerow) | type | | | [`NewLifecyclePipelineRow`](/packages/core/api/index#newlifecyclepipelinerow) | type | | | [`LifecycleStageRow`](/packages/core/api/index#lifecyclestagerow) | type | | | [`NewLifecycleStageRow`](/packages/core/api/index#newlifecyclestagerow) | type | | | [`LifecycleGateResultRow`](/packages/core/api/index#lifecyclegateresultrow) | type | | | [`NewLifecycleGateResultRow`](/packages/core/api/index#newlifecyclegateresultrow) | type | | | [`LifecycleEvidenceRow`](/packages/core/api/index#lifecycleevidencerow) | type | | | [`NewLifecycleEvidenceRow`](/packages/core/api/index#newlifecycleevidencerow) | type | | | [`LifecycleTransitionRow`](/packages/core/api/index#lifecycletransitionrow) | type | | | [`NewLifecycleTransitionRow`](/packages/core/api/index#newlifecycletransitionrow) | type | | | [`AuditLogRow`](/packages/core/api/index#auditlogrow) | type | | | [`NewAuditLogRow`](/packages/core/api/index#newauditlogrow) | type | | | [`TokenUsageRow`](/packages/core/api/index#tokenusagerow) | type | | | [`NewTokenUsageRow`](/packages/core/api/index#newtokenusagerow) | type | | | [`ArchitectureDecisionRow`](/packages/core/api/index#architecturedecisionrow) | type | | | [`NewArchitectureDecisionRow`](/packages/core/api/index#newarchitecturedecisionrow) | type | | | [`AdrTaskLinkRow`](/packages/core/api/index#adrtasklinkrow) | type | | | [`NewAdrTaskLinkRow`](/packages/core/api/index#newadrtasklinkrow) | type | | | [`AdrRelationRow`](/packages/core/api/index#adrrelationrow) | type | | | [`NewAdrRelationRow`](/packages/core/api/index#newadrrelationrow) | type | | | [`ManifestEntryRow`](/packages/core/api/index#manifestentryrow) | type | | | [`NewManifestEntryRow`](/packages/core/api/index#newmanifestentryrow) | type | | | [`PipelineManifestRow`](/packages/core/api/index#pipelinemanifestrow) | type | | | [`NewPipelineManifestRow`](/packages/core/api/index#newpipelinemanifestrow) | type | | | [`ReleaseManifestRow`](/packages/core/api/index#releasemanifestrow) | type | | | [`NewReleaseManifestRow`](/packages/core/api/index#newreleasemanifestrow) | type | | | [`ExternalTaskLinkRow`](/packages/core/api/index#externaltasklinkrow) | type | | | [`NewExternalTaskLinkRow`](/packages/core/api/index#newexternaltasklinkrow) | type | | | [`BrainDecisionRow`](/packages/core/api/index#braindecisionrow) | type | | | [`NewBrainDecisionRow`](/packages/core/api/index#newbraindecisionrow) | type | | | [`BrainPatternRow`](/packages/core/api/index#brainpatternrow) | type | | | [`NewBrainPatternRow`](/packages/core/api/index#newbrainpatternrow) | type | | | [`BrainLearningRow`](/packages/core/api/index#brainlearningrow) | type | | | [`NewBrainLearningRow`](/packages/core/api/index#newbrainlearningrow) | type | | | [`BrainObservationRow`](/packages/core/api/index#brainobservationrow) | type | | | [`NewBrainObservationRow`](/packages/core/api/index#newbrainobservationrow) | type | | | [`BrainMemoryLinkRow`](/packages/core/api/index#brainmemorylinkrow) | type | | | [`NewBrainMemoryLinkRow`](/packages/core/api/index#newbrainmemorylinkrow) | type | | | [`BrainPageNodeRow`](/packages/core/api/index#brainpagenoderow) | type | | | [`NewBrainPageNodeRow`](/packages/core/api/index#newbrainpagenoderow) | type | | | [`BrainPageEdgeRow`](/packages/core/api/index#brainpageedgerow) | type | | | [`NewBrainPageEdgeRow`](/packages/core/api/index#newbrainpageedgerow) | type | | | [`BrainStickyNoteRow`](/packages/core/api/index#brainstickynoterow) | type | | | [`NewBrainStickyNoteRow`](/packages/core/api/index#newbrainstickynoterow) | type | | | [`ProjectRegistryRow`](/packages/core/api/index#projectregistryrow) | type | | | [`NewProjectRegistryRow`](/packages/core/api/index#newprojectregistryrow) | type | | | [`NexusAuditLogRow`](/packages/core/api/index#nexusauditlogrow) | type | | | [`NewNexusAuditLogRow`](/packages/core/api/index#newnexusauditlogrow) | type | | | [`NexusSchemaMetaRow`](/packages/core/api/index#nexusschemametarow) | type | | | [`NewNexusSchemaMetaRow`](/packages/core/api/index#newnexusschemametarow) | type | | | [`ErrorDefinition`](/packages/core/api/index#errordefinition) | interface | A single entry in the unified error catalog. | | [`ProblemDetails`](/packages/core/api/index#problemdetails) | interface | RFC 9457 Problem Details object. Structured error representation for API resp... | | [`ArchiveFields`](/packages/core/api/index#archivefields) | interface | Archive-specific fields for task upsert. | | [`RegisterAgentOptions`](/packages/core/api/index#registeragentoptions) | interface | Options for registering a new agent instance. | | [`UpdateStatusOptions`](/packages/core/api/index#updatestatusoptions) | interface | Options for updating agent status. | | [`ListAgentFilters`](/packages/core/api/index#listagentfilters) | interface | Filters for listing agent instances. | | [`AgentHealthReport`](/packages/core/api/index#agenthealthreport) | interface | Agent health report summary. | | [`AtomicMigrationResult`](/packages/core/api/index#atomicmigrationresult) | interface | Atomic database migration result. | | [`ReleaseFn`](/packages/core/api/index#releasefn) | type | A release function returned by acquireLock. | | [`ProviderHookEvent`](/packages/core/api/index#providerhookevent) | type | CAAMP canonical hook event type. This is the normalized 16-event taxonomy fr... | | [`InternalHookEvent`](/packages/core/api/index#internalhookevent) | type | | | [`HookEvent`](/packages/core/api/index#hookevent) | type | Full CLEO hook event union. CAAMP defines provider-facing canonical events;... | | [`HookPayload`](/packages/core/api/index#hookpayload) | interface | Base interface for all hook payloads Provides common fields available across... | | [`SessionStartPayload`](/packages/core/api/index#sessionstartpayload) | interface | Payload for SessionStart hook (canonical: was onSessionStart) Fired when a CL... | | [`OnSessionStartPayload`](/packages/core/api/index#onsessionstartpayload) | type | | | [`SessionEndPayload`](/packages/core/api/index#sessionendpayload) | interface | Payload for SessionEnd hook (canonical: was onSessionEnd) Fired when a CLEO s... | | [`OnSessionEndPayload`](/packages/core/api/index#onsessionendpayload) | type | | | [`PreToolUsePayload`](/packages/core/api/index#pretoolusepayload) | interface | Payload for PreToolUse hook (canonical: was onToolStart) Fired when a task/to... | | [`OnToolStartPayload`](/packages/core/api/index#ontoolstartpayload) | type | | | [`PostToolUsePayload`](/packages/core/api/index#posttoolusepayload) | interface | Payload for PostToolUse hook (canonical: was onToolComplete) Fired when a tas... | | [`OnToolCompletePayload`](/packages/core/api/index#ontoolcompletepayload) | type | | | [`HookHandler`](/packages/core/api/index#hookhandler) | type | Handler function type for hook events Handlers receive project root and typed... | | [`HookRegistration`](/packages/core/api/index#hookregistration) | interface | Hook registration metadata Tracks registered handlers with priority and event... | | [`HookConfig`](/packages/core/api/index#hookconfig) | interface | Configuration for the hook system Controls which events are enabled/disabled | | [`NotificationPayload`](/packages/core/api/index#notificationpayload) | interface | Payload for Notification hook (canonical: was onFileChange) Fired when a trac... | | [`OnFileChangePayload`](/packages/core/api/index#onfilechangepayload) | type | | | [`PostToolUseFailurePayload`](/packages/core/api/index#posttoolusefailurepayload) | interface | Payload for PostToolUseFailure hook (canonical: was onError) Fired when an op... | | [`OnErrorPayload`](/packages/core/api/index#onerrorpayload) | type | | | [`PromptSubmitPayload`](/packages/core/api/index#promptsubmitpayload) | interface | Payload for PromptSubmit hook (canonical: was onPromptSubmit) Fired when an a... | | [`OnPromptSubmitPayload`](/packages/core/api/index#onpromptsubmitpayload) | type | | | [`ResponseCompletePayload`](/packages/core/api/index#responsecompletepayload) | interface | Payload for ResponseComplete hook (canonical: was onResponseComplete) Fired w\... | | [`OnResponseCompletePayload`](/packages/core/api/index#onresponsecompletepayload) | type | | | [`SubagentStartPayload`](/packages/core/api/index#subagentstartpayload) | interface | Payload for SubagentStart hook Fired when a subagent process is launched | | [`SubagentStopPayload`](/packages/core/api/index#subagentstoppayload) | interface | Payload for SubagentStop hook Fired when a subagent process completes | | [`PreCompactPayload`](/packages/core/api/index#precompactpayload) | interface | Payload for PreCompact hook Fired before context compaction begins | | [`PostCompactPayload`](/packages/core/api/index#postcompactpayload) | interface | Payload for PostCompact hook Fired after context compaction completes | | [`ConfigChangePayload`](/packages/core/api/index#configchangepayload) | interface | Payload for ConfigChange hook Fired when configuration is updated | | [`OnWorkAvailablePayload`](/packages/core/api/index#onworkavailablepayload) | interface | Payload for onWorkAvailable hook Fired when the system detects ready work on... | | [`OnAgentSpawnPayload`](/packages/core/api/index#onagentspawnpayload) | interface | Payload for onAgentSpawn hook Fired when a worker session/process is launched | | [`OnAgentCompletePayload`](/packages/core/api/index#onagentcompletepayload) | interface | Payload for onAgentComplete hook Fired when a worker finishes its assigned run | | [`OnCascadeStartPayload`](/packages/core/api/index#oncascadestartpayload) | interface | Payload for onCascadeStart hook Fired when autonomous execution begins flowin... | | [`OnPatrolPayload`](/packages/core/api/index#onpatrolpayload) | interface | Payload for onPatrol hook Fired when a watcher performs a periodic health/swe... | | [`CLEOLifecycleEvent`](/packages/core/api/index#cleolifecycleevent) | type | Type for CLEO lifecycle event names These are the internal events CLEO fires... | | [`CLEOAutonomousLifecycleEvent`](/packages/core/api/index#cleoautonomouslifecycleevent) | type | Type for autonomous CLEO lifecycle events. | | [`SaveJsonOptions`](/packages/core/api/index#savejsonoptions) | interface | Options for saveJson. | | [`CheckpointConfig`](/packages/core/api/index#checkpointconfig) | interface | Checkpoint configuration. | | [`CheckpointStatus`](/packages/core/api/index#checkpointstatus) | interface | Checkpoint status information. | | [`ChangedFile`](/packages/core/api/index#changedfile) | interface | Changed file with its status. | | [`SafetyOptions`](/packages/core/api/index#safetyoptions) | interface | Safety configuration - can be overridden per-operation | | [`RepairResult`](/packages/core/api/index#repairresult) | interface | Repair result with proper typing. | | [`SafetyConfig`](/packages/core/api/index#safetyconfig) | interface | Safety configuration options. | | [`NextDirectives`](/packages/core/api/index#nextdirectives) | type | Map of follow-up operation names to CLI command strings. | | [`TaskDetail`](/packages/core/api/index#taskdetail) | interface | Enriched task with hierarchy info. | | [`PaginateInput`](/packages/core/api/index#paginateinput) | interface | Input parameters for paginating a result set. T4668 T4663 | | [`CompactTask`](/packages/core/api/index#compacttask) | interface | Compact task representation — minimal fields for list responses. | | [`ListTasksOptions`](/packages/core/api/index#listtasksoptions) | interface | Filter options for listing tasks. | | [`ListTasksResult`](/packages/core/api/index#listtasksresult) | interface | Result of listing tasks. | | [`FindResult`](/packages/core/api/index#findresult) | interface | Minimal task info for search results. | | [`FindTasksOptions`](/packages/core/api/index#findtasksoptions) | interface | Options for finding tasks. | | [`FindTasksResult`](/packages/core/api/index#findtasksresult) | interface | Result of finding tasks. | | [`AdrFrontmatter`](/packages/core/api/index#adrfrontmatter) | interface | Parsed ADR frontmatter from .md file | | [`AdrRecord`](/packages/core/api/index#adrrecord) | interface | | | [`AdrSyncResult`](/packages/core/api/index#adrsyncresult) | interface | | | [`AdrListResult`](/packages/core/api/index#adrlistresult) | interface | | | [`AdrFindResult`](/packages/core/api/index#adrfindresult) | interface | | | [`PipelineAdrLinkResult`](/packages/core/api/index#pipelineadrlinkresult) | interface | | | [`EvidenceType`](/packages/core/api/index#evidencetype) | type | | | [`EvidenceRecord`](/packages/core/api/index#evidencerecord) | interface | | | [`RelatedLink`](/packages/core/api/index#relatedlink) | interface | Related link in frontmatter. | | [`FrontmatterMetadata`](/packages/core/api/index#frontmattermetadata) | interface | Frontmatter metadata for an RCASD artifact. | | [`ParsedFrontmatter`](/packages/core/api/index#parsedfrontmatter) | interface | Result of parsing frontmatter from a markdown file. | | [`Stage`](/packages/core/api/index#stage) | type | Stage type derived from canonical stage list. T4800 | | [`StageCategory`](/packages/core/api/index#stagecategory) | type | Stage category for grouping related stages. T4800 | | [`StageDefinition`](/packages/core/api/index#stagedefinition) | interface | Stage metadata with descriptive information. T4800 | | [`TransitionRule`](/packages/core/api/index#transitionrule) | interface | Transition rule - defines if a transition is allowed. T4800 | | [`StageArtifactResult`](/packages/core/api/index#stageartifactresult) | interface | | | [`SkillFrontmatter`](/packages/core/api/index#skillfrontmatter) | interface | Skill frontmatter parsed from SKILL.md YAML header. This is CLEO's extended... | | [`Skill`](/packages/core/api/index#skill) | interface | Skill definition loaded from disk. CLEO-specific type that wraps a... | | [`SkillSummary`](/packages/core/api/index#skillsummary) | interface | Lightweight skill summary for manifest/listing. Projected from `Skill` for e... | | [`SkillManifest`](/packages/core/api/index#skillmanifest) | interface | Skill manifest (cached aggregate of all discovered skills). | | [`SkillProtocolType`](/packages/core/api/index#skillprotocoltype) | type | RCASD-IVTR+C protocol types. | | [`AgentConfig`](/packages/core/api/index#agentconfig) | interface | Agent configuration from AGENT.md or agent definition. | | [`AgentRegistryEntry`](/packages/core/api/index#agentregistryentry) | interface | Agent registry entry. | | [`AgentRegistry`](/packages/core/api/index#agentregistry) | interface | Agent registry (persisted). | | [`SkillSearchScope`](/packages/core/api/index#skillsearchscope) | type | CAAMP search order for skill discovery. | | [`SkillSearchPath`](/packages/core/api/index#skillsearchpath) | interface | Ordered search path entry. | | [`DispatchStrategy`](/packages/core/api/index#dispatchstrategy) | type | Dispatch strategy for skill selection. | | [`DispatchResult`](/packages/core/api/index#dispatchresult) | interface | Dispatch result from skill\_auto\_dispatch. | | [`TokenDefinition`](/packages/core/api/index#tokendefinition) | interface | Token definition from placeholders.json. | | [`TokenValidationResult`](/packages/core/api/index#tokenvalidationresult) | interface | Token validation result. | | [`TokenContext`](/packages/core/api/index#tokencontext) | interface | Token injection context. | | [`OrchestratorThresholds`](/packages/core/api/index#orchestratorthresholds) | interface | Orchestrator context thresholds. | | [`PreSpawnCheckResult`](/packages/core/api/index#prespawncheckresult) | interface | Pre-spawn check result. | | [`SpawnPromptResult`](/packages/core/api/index#spawnpromptresult) | interface | Spawn prompt result. | | [`DependencyWave`](/packages/core/api/index#dependencywave) | interface | Dependency wave for parallel execution. | | [`DependencyAnalysis`](/packages/core/api/index#dependencyanalysis) | interface | Dependency analysis result. | | [`HitlSummary`](/packages/core/api/index#hitlsummary) | interface | HITL summary for session handoff. | | [`ManifestEntry`](/packages/core/api/index#manifestentry) | interface | Research manifest entry (pipeline\_manifest table, ADR-027). | | [`ManifestValidationResult`](/packages/core/api/index#manifestvalidationresult) | interface | Manifest validation result. | | [`ComplianceResult`](/packages/core/api/index#complianceresult) | interface | Compliance verification result. | | [`InstalledSkill`](/packages/core/api/index#installedskill) | interface | Installed skill tracking. | | [`InstalledSkillsFile`](/packages/core/api/index#installedskillsfile) | interface | Installed skills file. | | [`TokenValues`](/packages/core/api/index#tokenvalues) | type | Token values map: TOKEN\_NAME - value. | | [`MultiSkillComposition`](/packages/core/api/index#multiskillcomposition) | interface | Result of multi-skill composition. | | [`StageGuidance`](/packages/core/api/index#stageguidance) | interface | Structured guidance for a single pipeline stage. Pi extensions consume the... | | [`EnforcementMode`](/packages/core/api/index#enforcementmode) | type | Lifecycle enforcement modes. | | [`GateData`](/packages/core/api/index#gatedata) | interface | Gate data within a stage. | | [`ManifestStageData`](/packages/core/api/index#manifeststagedata) | interface | Stage data in an on-disk manifest. | | [`RcasdManifest`](/packages/core/api/index#rcasdmanifest) | interface | Canonical RCASD manifest-shaped interface for compatibility payloads. Lifecyc... | | [`GateCheckResult`](/packages/core/api/index#gatecheckresult) | interface | Gate check result. | | [`StageTransitionResult`](/packages/core/api/index#stagetransitionresult) | interface | Stage transition result. | | [`LifecycleHistoryEntry`](/packages/core/api/index#lifecyclehistoryentry) | interface | History entry for stage transitions. | | [`AlertLevel`](/packages/core/api/index#alertlevel) | type | Alert level names. | | [`AlertCheckResult`](/packages/core/api/index#alertcheckresult) | interface | Alert result from check\_context\_alert. | | [`FormatOptions`](/packages/core/api/index#formatoptions) | interface | Options for envelope formatting. T4668 T4670 T4663 | | [`CleoRegistryEntry`](/packages/core/api/index#cleoregistryentry) | interface | Entry in the CLEO-to-LAFS error registry. T4671 T4663 | | [`TestDbEnv`](/packages/core/api/index#testdbenv) | interface | Result of creating a test database environment. | | [`HierarchyValidation`](/packages/core/api/index#hierarchyvalidation) | interface | Validate that adding a child to a parent would not violate constraints. | | [`TaskTreeNode`](/packages/core/api/index#tasktreenode) | interface | Build a tree structure from flat task list. | | [`HierarchyPolicy`](/packages/core/api/index#hierarchypolicy) | interface | | | [`HierarchyValidationResult`](/packages/core/api/index#hierarchyvalidationresult) | interface | | | [`StrictnessPreset`](/packages/core/api/index#strictnesspreset) | type | Valid preset names. | | [`PresetDefinition`](/packages/core/api/index#presetdefinition) | interface | A preset definition: the config keys it sets and a human description. | | [`ApplyPresetResult`](/packages/core/api/index#applypresetresult) | interface | Result of applying a preset. | | [`SessionRecord`](/packages/core/api/index#sessionrecord) | interface | Session object (engine-compatible). | | [`TaskWorkStateExt`](/packages/core/api/index#taskworkstateext) | interface | Task work state from the task store. Extends the strict contracts... | | [`DecisionRecord`](/packages/core/api/index#decisionrecord) | interface | Decision record stored in decisions.jsonl. | | [`AssumptionRecord`](/packages/core/api/index#assumptionrecord) | interface | Assumption record stored in assumptions.jsonl. | | [`RecordDecisionParams`](/packages/core/api/index#recorddecisionparams) | interface | | | [`DecisionLogParams`](/packages/core/api/index#decisionlogparams) | interface | | | [`HandoffData`](/packages/core/api/index#handoffdata) | interface | Handoff data schema - structured state for session transition. | | [`ComputeHandoffOptions`](/packages/core/api/index#computehandoffoptions) | interface | Options for computing handoff data. | | [`GitState`](/packages/core/api/index#gitstate) | interface | Git state snapshot captured at session end. | | [`DebriefDecision`](/packages/core/api/index#debriefdecision) | interface | Decision summary for debrief output. | | [`DebriefData`](/packages/core/api/index#debriefdata) | interface | Rich debrief data — superset of HandoffData. Captures comprehensive session s... | | [`ComputeDebriefOptions`](/packages/core/api/index#computedebriefoptions) | interface | Options for computing debrief data. | | [`BrainFtsRow`](/packages/core/api/index#brainftsrow) | interface | Row returned by FTS content\_hash duplicate check (brain-retrieval.ts observeB... | | [`BrainNarrativeRow`](/packages/core/api/index#brainnarrativerow) | interface | Row returned by narrative backfill query (brain-retrieval.ts populateEmbeddin... | | [`BrainSearchHit`](/packages/core/api/index#brainsearchhit) | interface | Flattened FTS hit used in hybrid search scoring (brain-search.ts hybridSearch). | | [`BrainKnnRow`](/packages/core/api/index#brainknnrow) | interface | Row returned by KNN vector similarity query (brain-similarity.ts searchSimilar). | | [`BrainDecisionNode`](/packages/core/api/index#braindecisionnode) | interface | Decision node attached to a blocker in causal traces (brain-reasoning.ts reas... | | [`BrainAnchor`](/packages/core/api/index#brainanchor) | interface | Anchor entry in a timeline result (brain-retrieval.ts timelineBrain). | | [`BrainTimelineNeighborRow`](/packages/core/api/index#braintimelineneighborrow) | interface | Row returned by timeline UNION ALL neighbor queries (brain-retrieval.ts timel... | | [`BrainConsolidationObservationRow`](/packages/core/api/index#brainconsolidationobservationrow) | interface | Row returned by the consolidation observation query (brain-lifecycle.ts conso... | | [`BrainIdCheckRow`](/packages/core/api/index#brainidcheckrow) | interface | Row returned by ID existence check queries (claude-mem-migration.ts). Used b... | | [`EmbeddingProvider`](/packages/core/api/index#embeddingprovider) | interface | Contract for embedding providers (local models, API services, etc.). | | [`SimilarityResult`](/packages/core/api/index#similarityresult) | interface | | | [`BrainSearchResult`](/packages/core/api/index#brainsearchresult) | interface | Search result with BM25 rank. | | [`BrainSearchOptions`](/packages/core/api/index#brainsearchoptions) | interface | Search options. | | [`HybridResult`](/packages/core/api/index#hybridresult) | interface | Result from hybridSearch combining multiple search signals. | | [`HybridSearchOptions`](/packages/core/api/index#hybridsearchoptions) | interface | Options for hybridSearch weighting and limits. | | [`MemoryBridgeConfig`](/packages/core/api/index#memorybridgeconfig) | interface | Configuration for memory bridge content generation. | | [`BrainCompactHit`](/packages/core/api/index#braincompacthit) | interface | Compact search hit — minimal fields for index-level results. | | [`SearchBrainCompactParams`](/packages/core/api/index#searchbraincompactparams) | interface | Parameters for searchBrainCompact. | | [`SearchBrainCompactResult`](/packages/core/api/index#searchbraincompactresult) | interface | Result from searchBrainCompact. | | [`TimelineBrainParams`](/packages/core/api/index#timelinebrainparams) | interface | Parameters for timelineBrain. | | [`TimelineNeighbor`](/packages/core/api/index#timelineneighbor) | interface | Timeline entry — compact id/type/date tuple. | | [`TimelineBrainResult`](/packages/core/api/index#timelinebrainresult) | interface | Result from timelineBrain. | | [`FetchBrainEntriesParams`](/packages/core/api/index#fetchbrainentriesparams) | interface | Parameters for fetchBrainEntries. | | [`FetchedBrainEntry`](/packages/core/api/index#fetchedbrainentry) | interface | Fetched entry with full data. | | [`FetchBrainEntriesResult`](/packages/core/api/index#fetchbrainentriesresult) | interface | Result from fetchBrainEntries. | | [`BrainObservationType`](/packages/core/api/index#brainobservationtype) | type | Observation type from schema. | | [`BrainObservationSourceType`](/packages/core/api/index#brainobservationsourcetype) | type | Observation source type from schema. | | [`ObserveBrainParams`](/packages/core/api/index#observebrainparams) | interface | Parameters for observeBrain. | | [`ObserveBrainResult`](/packages/core/api/index#observebrainresult) | interface | Result from observeBrain. | | [`PopulateEmbeddingsResult`](/packages/core/api/index#populateembeddingsresult) | interface | Result from populateEmbeddings backfill. | | [`PopulateEmbeddingsOptions`](/packages/core/api/index#populateembeddingsoptions) | interface | Options for the embedding backfill pipeline. | | [`AuditEntry`](/packages/core/api/index#auditentry) | interface | Audit entry interface. Used by session-grade and system-engine for behavioral... | | [`StoreLearningParams`](/packages/core/api/index#storelearningparams) | interface | Parameters for storing a new learning. | | [`SearchLearningParams`](/packages/core/api/index#searchlearningparams) | interface | Parameters for searching learnings. | | [`DimensionScore`](/packages/core/api/index#dimensionscore) | interface | | | [`GradeResult`](/packages/core/api/index#graderesult) | interface | | | [`AdapterInfo`](/packages/core/api/index#adapterinfo) | interface | Summary info for an adapter without exposing the full instance. | | [`SessionBridgeData`](/packages/core/api/index#sessionbridgedata) | interface | Session data needed to create a memory bridge observation. | | [`StoreDecisionParams`](/packages/core/api/index#storedecisionparams) | interface | Parameters for storing a new decision. | | [`SearchDecisionParams`](/packages/core/api/index#searchdecisionparams) | interface | Parameters for searching decisions. | | [`ListDecisionParams`](/packages/core/api/index#listdecisionparams) | interface | Parameters for listing decisions. | | [`PatternType`](/packages/core/api/index#patterntype) | type | Pattern types from ADR-009. | | [`PatternImpact`](/packages/core/api/index#patternimpact) | type | Impact level. | | [`StorePatternParams`](/packages/core/api/index#storepatternparams) | interface | Parameters for storing a new pattern. | | [`SearchPatternParams`](/packages/core/api/index#searchpatternparams) | interface | Parameters for searching patterns. | | [`RecordAssumptionParams`](/packages/core/api/index#recordassumptionparams) | interface | | | [`BulkLinkEntry`](/packages/core/api/index#bulklinkentry) | interface | A link to be created in bulk. | | [`SessionMemoryResult`](/packages/core/api/index#sessionmemoryresult) | interface | Result of persisting session memory to brain.db. | | [`MemoryItem`](/packages/core/api/index#memoryitem) | interface | A memory item to be persisted to brain.db. | | [`SessionMemoryContext`](/packages/core/api/index#sessionmemorycontext) | interface | Memory context returned for session start/resume enrichment. | | [`Pipeline`](/packages/core/api/index#pipeline) | interface | Pipeline entity representing a task's lifecycle state. T4800 T4799 - Unifi... | | [`PipelineStageRecord`](/packages/core/api/index#pipelinestagerecord) | interface | Pipeline stage record linking pipeline to individual stages. T4800 T4801 -... | | [`PipelineTransition`](/packages/core/api/index#pipelinetransition) | interface | Pipeline transition record for audit trail. T4800 T4801 - Requires pipelin... | | [`InitializePipelineOptions`](/packages/core/api/index#initializepipelineoptions) | interface | Options for initializing a pipeline. T4800 | | [`AdvanceStageOptions`](/packages/core/api/index#advancestageoptions) | interface | Options for advancing pipeline stage. T4800 | | [`PipelineQueryOptions`](/packages/core/api/index#pipelinequeryoptions) | interface | Pipeline query options. T4800 | | [`BriefingTask`](/packages/core/api/index#briefingtask) | interface | Task summary for briefing output. | | [`BriefingBug`](/packages/core/api/index#briefingbug) | interface | Bug summary for briefing output. | | [`BriefingBlockedTask`](/packages/core/api/index#briefingblockedtask) | interface | Blocked task summary for briefing output. | | [`BriefingEpic`](/packages/core/api/index#briefingepic) | interface | Active epic summary for briefing output. | | [`PipelineStageInfo`](/packages/core/api/index#pipelinestageinfo) | interface | Pipeline stage data for briefing output. | | [`LastSessionInfo`](/packages/core/api/index#lastsessioninfo) | interface | Last session info with handoff data. | | [`CurrentTaskInfo`](/packages/core/api/index#currenttaskinfo) | interface | Currently active task info. | | [`SessionBriefing`](/packages/core/api/index#sessionbriefing) | interface | Session briefing result. | | [`BriefingOptions`](/packages/core/api/index#briefingoptions) | interface | Options for computing session briefing. | | [`MinimalSessionRecord`](/packages/core/api/index#minimalsessionrecord) | interface | Minimal session record returned by findSessions(). | | [`FindSessionsParams`](/packages/core/api/index#findsessionsparams) | interface | Parameters for findSessions(). | | [`ContextDriftResult`](/packages/core/api/index#contextdriftresult) | interface | | | [`SessionHistoryEntry`](/packages/core/api/index#sessionhistoryentry) | interface | | | [`SessionHistoryParams`](/packages/core/api/index#sessionhistoryparams) | interface | | | [`SessionStatsResult`](/packages/core/api/index#sessionstatsresult) | interface | | | [`RuntimeProviderContext`](/packages/core/api/index#runtimeprovidercontext) | interface | | | [`RuntimeProviderSnapshot`](/packages/core/api/index#runtimeprovidersnapshot) | interface | | | [`StartSessionOptions`](/packages/core/api/index#startsessionoptions) | interface | Options for starting a session. | | [`EndSessionOptions`](/packages/core/api/index#endsessionoptions) | interface | Options for ending a session. | | [`ListSessionsOptions`](/packages/core/api/index#listsessionsoptions) | interface | Options for listing sessions. | | [`EnforcementMode`](/packages/core/api/index#enforcementmode) | type | Enforcement modes. | | [`ActiveSessionInfo`](/packages/core/api/index#activesessioninfo) | interface | Session info for enforcement checks. | | [`EnforcementResult`](/packages/core/api/index#enforcementresult) | interface | Enforcement result. | | [`ValidationResult`](/packages/core/api/index#validationresult) | interface | | | [`AddTaskEnforcementOptions`](/packages/core/api/index#addtaskenforcementoptions) | interface | | | [`UpdateTaskEnforcementOptions`](/packages/core/api/index#updatetaskenforcementoptions) | interface | | | [`AcceptanceEnforcement`](/packages/core/api/index#acceptanceenforcement) | interface | | | [`ResolvedParent`](/packages/core/api/index#resolvedparent) | interface | Minimal parent task shape needed for pipeline stage resolution. T060 | | [`TaskPipelineStage`](/packages/core/api/index#taskpipelinestage) | type | Union type of all valid pipeline stage names. | | [`LifecycleMode`](/packages/core/api/index#lifecyclemode) | type | The resolved enforcement mode (from lifecycle.mode config key). | | [`EpicEnforcementResult`](/packages/core/api/index#epicenforcementresult) | interface | Result of an enforcement check. `warning` is populated in advisory mode. | | [`AddTaskOptions`](/packages/core/api/index#addtaskoptions) | interface | Options for creating a task. `description` is **required** per CLEO's anti-h... | | [`AddTaskResult`](/packages/core/api/index#addtaskresult) | interface | Result of adding a task. | | [`ListPhasesResult`](/packages/core/api/index#listphasesresult) | interface | Options for listing phases. | | [`SetPhaseOptions`](/packages/core/api/index#setphaseoptions) | interface | Options for setting current phase. | | [`SetPhaseResult`](/packages/core/api/index#setphaseresult) | interface | Result of a phase set operation. | | [`ShowPhaseResult`](/packages/core/api/index#showphaseresult) | interface | Phase show result. | | [`AdvancePhaseResult`](/packages/core/api/index#advancephaseresult) | interface | Phase advance result. | | [`RenamePhaseResult`](/packages/core/api/index#renamephaseresult) | interface | Phase rename result. | | [`DeletePhaseResult`](/packages/core/api/index#deletephaseresult) | interface | Phase delete result. | | [`PruneResult`](/packages/core/api/index#pruneresult) | interface | | | [`SchemaInstallResult`](/packages/core/api/index#schemainstallresult) | interface | | | [`StalenessReport`](/packages/core/api/index#stalenessreport) | interface | | | [`InstalledSchema`](/packages/core/api/index#installedschema) | interface | | | [`CheckResult`](/packages/core/api/index#checkresult) | interface | | | [`JsonFileIntegrityResult`](/packages/core/api/index#jsonfileintegrityresult) | interface | Result for a single file check. | | [`SchemaIntegrityReport`](/packages/core/api/index#schemaintegrityreport) | interface | Full integrity report for all JSON files. | | [`ProjectType`](/packages/core/api/index#projecttype) | type | Detected project type. | | [`TestFramework`](/packages/core/api/index#testframework) | type | Test framework. | | [`FileNamingConvention`](/packages/core/api/index#filenamingconvention) | type | | | [`ImportStyle`](/packages/core/api/index#importstyle) | type | | | [`ProjectContext`](/packages/core/api/index#projectcontext) | interface | Schema-compliant project context for LLM agent consumption. | | [`ScaffoldResult`](/packages/core/api/index#scaffoldresult) | interface | | | [`InjectionCheckResult`](/packages/core/api/index#injectioncheckresult) | interface | | | [`ScaffoldResult`](/packages/core/api/index#scaffoldresult) | interface | Result of an ensure\* scaffolding operation. | | [`CheckStatus`](/packages/core/api/index#checkstatus) | type | Status of a check\* diagnostic. | | [`CheckResult`](/packages/core/api/index#checkresult) | interface | Result of a check\* diagnostic (compatible with doctor/checks.ts CheckResult). | | [`ProjectClassification`](/packages/core/api/index#projectclassification) | interface | Classification result for a project directory. | | [`ClassificationSignal`](/packages/core/api/index#classificationsignal) | interface | A single classification signal detected on the filesystem. | | [`ScaffoldResult`](/packages/core/api/index#scaffoldresult) | interface | | | [`HookCheckResult`](/packages/core/api/index#hookcheckresult) | interface | | | [`EnsureGitHooksOptions`](/packages/core/api/index#ensuregithooksoptions) | interface | | | [`ManagedHook`](/packages/core/api/index#managedhook) | type | | | [`LegacyDetectionResult`](/packages/core/api/index#legacydetectionresult) | interface | Result of detecting legacy agent-output directories. | | [`AgentOutputsMigrationResult`](/packages/core/api/index#agentoutputsmigrationresult) | interface | Result of running the agent-outputs migration. | | [`NexusPermissionLevel`](/packages/core/api/index#nexuspermissionlevel) | type | | | [`NexusHealthStatus`](/packages/core/api/index#nexushealthstatus) | type | | | [`NexusProject`](/packages/core/api/index#nexusproject) | interface | Domain representation of a registered Nexus project. | | [`NexusRegistryFile`](/packages/core/api/index#nexusregistryfile) | interface | Legacy registry file shape (pre-SQLite). Retained for migration compatibility. | | [`StackAnalysis`](/packages/core/api/index#stackanalysis) | interface | | | [`ArchAnalysis`](/packages/core/api/index#archanalysis) | interface | | | [`StructureAnalysis`](/packages/core/api/index#structureanalysis) | interface | | | [`ConventionAnalysis`](/packages/core/api/index#conventionanalysis) | interface | | | [`TestingAnalysis`](/packages/core/api/index#testinganalysis) | interface | | | [`IntegrationAnalysis`](/packages/core/api/index#integrationanalysis) | interface | | | [`ConcernAnalysis`](/packages/core/api/index#concernanalysis) | interface | | | [`CodebaseMapResult`](/packages/core/api/index#codebasemapresult) | interface | | | [`MapCodebaseOptions`](/packages/core/api/index#mapcodebaseoptions) | interface | | | [`InitOptions`](/packages/core/api/index#initoptions) | interface | Options for the init operation. | | [`InitResult`](/packages/core/api/index#initresult) | interface | Result of the init operation. | | [`BootstrapContext`](/packages/core/api/index#bootstrapcontext) | interface | Result tracking arrays passed through each bootstrap step. | | [`BootstrapOptions`](/packages/core/api/index#bootstrapoptions) | interface | Options for bootstrapGlobalCleo. | | [`ExportFormat`](/packages/core/api/index#exportformat) | type | | | [`ExportParams`](/packages/core/api/index#exportparams) | interface | | | [`ExportResult`](/packages/core/api/index#exportresult) | interface | | | [`ImportParams`](/packages/core/api/index#importparams) | interface | | | [`ImportResult`](/packages/core/api/index#importresult) | interface | | | [`AgentExecutionOutcome`](/packages/core/api/index#agentexecutionoutcome) | type | The outcome of an agent's execution attempt on a task. | | [`AgentExecutionEvent`](/packages/core/api/index#agentexecutionevent) | interface | Context recorded when an agent completes or fails a task. | | [`AgentPerformanceSummary`](/packages/core/api/index#agentperformancesummary) | interface | Summary of an agent type's execution performance on a task type. | | [`HealingSuggestion`](/packages/core/api/index#healingsuggestion) | interface | A self-healing suggestion derived from failure pattern history. | | [`AgentCapacity`](/packages/core/api/index#agentcapacity) | interface | Task-count-based capacity for a single agent instance. | | [`AgentPerformanceMetrics`](/packages/core/api/index#agentperformancemetrics) | interface | Metrics provided when recording agent performance. | | [`CapacitySummary`](/packages/core/api/index#capacitysummary) | interface | Capacity summary for reporting. | | [`AgentHealthStatus`](/packages/core/api/index#agenthealthstatus) | interface | Health status of a specific agent instance. | | [`RetryPolicy`](/packages/core/api/index#retrypolicy) | interface | Configuration for retry behavior. | | [`RetryResult`](/packages/core/api/index#retryresult) | interface | Result of a retried operation. | | [`AgentRecoveryResult`](/packages/core/api/index#agentrecoveryresult) | interface | Result of a recovery attempt for a single agent. | | [`RiskFactor`](/packages/core/api/index#riskfactor) | interface | A single factor contributing to a task's overall risk score. Each factor has... | | [`RiskAssessment`](/packages/core/api/index#riskassessment) | interface | Complete risk assessment for a single task. Returned by `calculateTaskRisk`.... | | [`ValidationPrediction`](/packages/core/api/index#validationprediction) | interface | Predicted outcome for a lifecycle validation gate. Returned by... | | [`DetectedPattern`](/packages/core/api/index#detectedpattern) | interface | A pattern automatically detected from historical brain/task data. Detected p... | | [`PatternMatch`](/packages/core/api/index#patternmatch) | interface | Result of matching a task against known patterns from brain\_patterns. Includ... | | [`PatternExtractionOptions`](/packages/core/api/index#patternextractionoptions) | interface | Options for pattern extraction from historical data. | | [`PatternStatsUpdate`](/packages/core/api/index#patternstatsupdate) | interface | Result of updating pattern statistics after an outcome. | | [`LearningContext`](/packages/core/api/index#learningcontext) | interface | Summary of applicable learnings for a task, used in prediction. | | [`ImpactAssessment`](/packages/core/api/index#impactassessment) | interface | Full impact assessment for a task within its dependency graph. Captures dire... | | [`ChangeType`](/packages/core/api/index#changetype) | type | The type of change being analyzed. | | [`ChangeImpact`](/packages/core/api/index#changeimpact) | interface | Predicted downstream effects of a specific change to a task. Models what hap... | | [`AffectedTask`](/packages/core/api/index#affectedtask) | interface | A single task affected by a change, with its predicted new state. | | [`ImpactedTask`](/packages/core/api/index#impactedtask) | interface | A single task predicted to be affected by a free-text change description. Pr... | | [`ImpactReport`](/packages/core/api/index#impactreport) | interface | Full impact prediction report for a free-text change description. Returned b... | | [`BlastRadiusSeverity`](/packages/core/api/index#blastradiusseverity) | type | Severity classification for blast radius. | | [`BlastRadius`](/packages/core/api/index#blastradius) | interface | Quantified scope of a task's impact across the project. | | [`GateFocusRecommendation`](/packages/core/api/index#gatefocusrecommendation) | interface | A gate-level focus recommendation produced by adaptive validation. | | [`AdaptiveValidationSuggestion`](/packages/core/api/index#adaptivevalidationsuggestion) | interface | Full adaptive validation suggestion set for a task. | | [`VerificationConfidenceScore`](/packages/core/api/index#verificationconfidencescore) | interface | Result of scoring and persisting a completed verification round. | | [`StorePredictionOptions`](/packages/core/api/index#storepredictionoptions) | interface | Parameters for storing a quality prediction as a brain observation. | | [`DependencyCheckResult`](/packages/core/api/index#dependencycheckresult) | interface | Result of a dependency validation check. | | [`DependencyError`](/packages/core/api/index#dependencyerror) | interface | A dependency error. | | [`DependencyWarning`](/packages/core/api/index#dependencywarning) | interface | A dependency warning. | | [`DependencyWave`](/packages/core/api/index#dependencywave) | interface | A wave of parallelizable tasks. | | [`NexusParsedQuery`](/packages/core/api/index#nexusparsedquery) | interface | | | [`NexusResolvedTask`](/packages/core/api/index#nexusresolvedtask) | type | Task with project context annotation. | | [`DiscoverResult`](/packages/core/api/index#discoverresult) | interface | | | [`NexusDiscoverResult`](/packages/core/api/index#nexusdiscoverresult) | interface | | | [`SearchResult`](/packages/core/api/index#searchresult) | interface | | | [`NexusSearchResult`](/packages/core/api/index#nexussearchresult) | interface | | | [`PermissionCheckResult`](/packages/core/api/index#permissioncheckresult) | interface | | | [`SharingStatus`](/packages/core/api/index#sharingstatus) | interface | Result of a sharing status check. | | [`TaskCurrentResult`](/packages/core/api/index#taskcurrentresult) | interface | Result of getting current task. | | [`TaskStartResult`](/packages/core/api/index#taskstartresult) | interface | Result of starting work on a task. | | [`TaskWorkHistoryEntry`](/packages/core/api/index#taskworkhistoryentry) | interface | Task work history entry. | | [`CompleteTaskOptions`](/packages/core/api/index#completetaskoptions) | interface | Options for completing a task. | | [`CompleteTaskResult`](/packages/core/api/index#completetaskresult) | interface | Result of completing a task. | | [`RuleViolation`](/packages/core/api/index#ruleviolation) | interface | Validation error from anti-hallucination checks | | [`UpdateTaskOptions`](/packages/core/api/index#updatetaskoptions) | interface | Options for updating a task. | | [`UpdateTaskResult`](/packages/core/api/index#updatetaskresult) | interface | Result of updating a task. | | [`ParsedDirective`](/packages/core/api/index#parseddirective) | interface | Parsed directive from a Conduit message. | | [`RouteResult`](/packages/core/api/index#routeresult) | interface | Result of routing a directive to a project. | | [`WorkspaceStatus`](/packages/core/api/index#workspacestatus) | interface | Aggregated task status across all projects. | | [`WorkspaceProjectSummary`](/packages/core/api/index#workspaceprojectsummary) | interface | Task summary for a single project. | | [`WorkspaceAgent`](/packages/core/api/index#workspaceagent) | interface | Agent info aggregated across projects. | | [`ProjectACL`](/packages/core/api/index#projectacl) | interface | Project-level ACL entry. | | [`DepNode`](/packages/core/api/index#depnode) | interface | A node in the dependency graph. | | [`DepsOverviewResult`](/packages/core/api/index#depsoverviewresult) | interface | Dependency overview result. | | [`TaskDepsResult`](/packages/core/api/index#taskdepsresult) | interface | Single task dependency result. | | [`ExecutionWave`](/packages/core/api/index#executionwave) | interface | Execution wave (group of parallelizable tasks). | | [`CriticalPathResult`](/packages/core/api/index#criticalpathresult) | interface | Critical path result. | | [`CycleResult`](/packages/core/api/index#cycleresult) | interface | Cycle detection result. | | [`TreeNode`](/packages/core/api/index#treenode) | interface | Tree node representation. | | [`CircularDependency`](/packages/core/api/index#circulardependency) | type | A circular dependency cycle found via DFS traversal. | | [`MissingDependency`](/packages/core/api/index#missingdependency) | interface | A missing dependency reference within an epic. | | [`DependencyAnalysis`](/packages/core/api/index#dependencyanalysis) | interface | Full dependency analysis result for an epic. | | [`ContextEstimation`](/packages/core/api/index#contextestimation) | interface | Context estimation result. | | [`Wave`](/packages/core/api/index#wave) | interface | | | [`EnrichedWave`](/packages/core/api/index#enrichedwave) | interface | | | [`StatusCounts`](/packages/core/api/index#statuscounts) | interface | Status counts by task state. | | [`EpicStatus`](/packages/core/api/index#epicstatus) | interface | Epic-specific status result. | | [`OverallStatus`](/packages/core/api/index#overallstatus) | interface | Overall orchestration status (no specific epic). | | [`ProgressMetrics`](/packages/core/api/index#progressmetrics) | interface | Progress metrics for orchestration check. | | [`StartupSummary`](/packages/core/api/index#startupsummary) | interface | Startup summary for an epic. | | [`OrchestratorSession`](/packages/core/api/index#orchestratorsession) | interface | Orchestrator session state. | | [`SpawnContext`](/packages/core/api/index#spawncontext) | interface | Spawn context for a subagent. | | [`TaskReadiness`](/packages/core/api/index#taskreadiness) | interface | Task readiness assessment. | | [`AnalysisResult`](/packages/core/api/index#analysisresult) | interface | Orchestrator analysis result. | | [`ArtifactType`](/packages/core/api/index#artifacttype) | type | Supported artifact types. | | [`ArtifactConfig`](/packages/core/api/index#artifactconfig) | interface | Artifact configuration from release config. | | [`ArtifactResult`](/packages/core/api/index#artifactresult) | interface | Result of an artifact operation. | | [`ArtifactHandler`](/packages/core/api/index#artifacthandler) | interface | Artifact handler interface. | | [`ReleaseConfig`](/packages/core/api/index#releaseconfig) | interface | Release configuration shape. | | [`ReleaseGate`](/packages/core/api/index#releasegate) | interface | Release gate definition. | | [`GitFlowConfig`](/packages/core/api/index#gitflowconfig) | interface | GitFlow branch configuration. | | [`ChannelConfig`](/packages/core/api/index#channelconfig) | interface | Channel-to-branch mapping for npm dist-tag resolution. | | [`PushMode`](/packages/core/api/index#pushmode) | type | Push mode: direct push vs PR creation vs auto-detect. | | [`ReleaseChannel`](/packages/core/api/index#releasechannel) | type | npm dist-tag channel for a release. | | [`ChannelValidationResult`](/packages/core/api/index#channelvalidationresult) | interface | Result of validating a version string against a channel's expectations. | | [`CIPlatform`](/packages/core/api/index#ciplatform) | type | Supported CI/CD platforms. | | [`BranchProtectionResult`](/packages/core/api/index#branchprotectionresult) | interface | | | [`PRCreateOptions`](/packages/core/api/index#prcreateoptions) | interface | | | [`PRResult`](/packages/core/api/index#prresult) | interface | | | [`RepoIdentity`](/packages/core/api/index#repoidentity) | interface | | | [`EpicCompletenessResult`](/packages/core/api/index#epiccompletenessresult) | interface | Epic completeness result. | | [`DoubleListingResult`](/packages/core/api/index#doublelistingresult) | interface | Double-listing check result. | | [`BumpType`](/packages/core/api/index#bumptype) | type | Bump type for version calculation. | | [`VersionBumpTarget`](/packages/core/api/index#versionbumptarget) | interface | Version bump target config from .cleo/config.json. | | [`BumpResult`](/packages/core/api/index#bumpresult) | interface | Bump result for a single file. | | [`ReleaseManifest`](/packages/core/api/index#releasemanifest) | interface | Release manifest structure. | | [`ReleaseListOptions`](/packages/core/api/index#releaselistoptions) | interface | | | [`ReleaseTaskRecord`](/packages/core/api/index#releasetaskrecord) | interface | Task record shape needed for release operations. | | [`ReleaseGateMetadata`](/packages/core/api/index#releasegatemetadata) | interface | Metadata captured during gate evaluation, returned alongside gate results. Do... | | [`PushPolicy`](/packages/core/api/index#pushpolicy) | interface | Push policy configuration from config.release.push. | | [`SnapshotDecision`](/packages/core/api/index#snapshotdecision) | interface | A decision recorded during the session. | | [`SnapshotObservation`](/packages/core/api/index#snapshotobservation) | interface | Brain observation linked to this session. | | [`SnapshotTaskContext`](/packages/core/api/index#snapshottaskcontext) | interface | Active task context at snapshot time. | | [`SessionSnapshot`](/packages/core/api/index#sessionsnapshot) | interface | Complete session snapshot — everything needed to resume. This is the seriali... | | [`SerializeOptions`](/packages/core/api/index#serializeoptions) | interface | Options for serializing a session. | | [`RestoreOptions`](/packages/core/api/index#restoreoptions) | interface | Options for restoring a session. | | [`StickyNoteStatus`](/packages/core/api/index#stickynotestatus) | type | Sticky note status values. | | [`StickyNoteColor`](/packages/core/api/index#stickynotecolor) | type | Sticky note color options. | | [`StickyNotePriority`](/packages/core/api/index#stickynotepriority) | type | Sticky note priority levels. | | [`ConvertedTargetType`](/packages/core/api/index#convertedtargettype) | type | Converted target type. | | [`ConvertedTarget`](/packages/core/api/index#convertedtarget) | interface | Converted target reference. | | [`StickyNote`](/packages/core/api/index#stickynote) | interface | Core sticky note interface. | | [`CreateStickyParams`](/packages/core/api/index#createstickyparams) | interface | Parameters for creating a sticky note. | | [`ListStickiesParams`](/packages/core/api/index#liststickiesparams) | interface | Parameters for listing sticky notes. | | [`ConvertStickyParams`](/packages/core/api/index#convertstickyparams) | interface | Parameters for converting a sticky note. | | [`ArchiveTasksOptions`](/packages/core/api/index#archivetasksoptions) | interface | Options for archiving tasks. | | [`ArchiveTasksResult`](/packages/core/api/index#archivetasksresult) | interface | Result of archiving tasks. | | [`DeleteTaskOptions`](/packages/core/api/index#deletetaskoptions) | interface | Options for deleting a task. | | [`DeleteTaskResult`](/packages/core/api/index#deletetaskresult) | interface | Result of deleting a task. | | [`EngineResult`](/packages/core/api/index#engineresult) | interface | Canonical EngineResult type used by all engines and core engine-compat modules. | | [`ExportMeta`](/packages/core/api/index#exportmeta) | interface | Export package metadata. | | [`ExportSelection`](/packages/core/api/index#exportselection) | interface | Export selection criteria. | | [`IdMapEntry`](/packages/core/api/index#idmapentry) | interface | ID map entry. | | [`RelationshipGraph`](/packages/core/api/index#relationshipgraph) | interface | Relationship graph. | | [`ExportPackage`](/packages/core/api/index#exportpackage) | interface | Complete export package. | | [`ExportTasksParams`](/packages/core/api/index#exporttasksparams) | interface | | | [`ExportTasksResult`](/packages/core/api/index#exporttasksresult) | interface | | | [`HelpOperationDef`](/packages/core/api/index#helpoperationdef) | interface | Minimal operation definition consumed by help logic. | | [`CostHint`](/packages/core/api/index#costhint) | type | Cost hint classification for an operation. | | [`GroupedOperations`](/packages/core/api/index#groupedoperations) | interface | Domain-grouped operation format (compact). | | [`VerboseOperation`](/packages/core/api/index#verboseoperation) | interface | Verbose operation entry with cost hints. | | [`HelpResult`](/packages/core/api/index#helpresult) | interface | Result of the help computation. | | [`TransferMode`](/packages/core/api/index#transfermode) | type | Transfer mode: copy keeps source tasks, move archives them. | | [`TransferScope`](/packages/core/api/index#transferscope) | type | Transfer scope: single task or full subtree. | | [`TransferOnConflict`](/packages/core/api/index#transferonconflict) | type | Conflict resolution when target has tasks with duplicate titles. | | [`TransferOnMissingDep`](/packages/core/api/index#transferonmissingdep) | type | How to handle missing dependencies in the target project. | | [`TransferParams`](/packages/core/api/index#transferparams) | interface | Parameters for a cross-project transfer operation. | | [`TransferManifestEntry`](/packages/core/api/index#transfermanifestentry) | interface | A single task entry in the transfer manifest. | | [`TransferManifest`](/packages/core/api/index#transfermanifest) | interface | Manifest describing what was (or would be) transferred. | | [`TransferResult`](/packages/core/api/index#transferresult) | interface | Result of a transfer operation. | | [`ImportFromPackageOptions`](/packages/core/api/index#importfrompackageoptions) | interface | Options passed to importFromPackage (extracted from importTasksPackage). | | [`ImportFromPackageResult`](/packages/core/api/index#importfrompackageresult) | interface | Result from importFromPackage. | | [`RemapTable`](/packages/core/api/index#remaptable) | interface | Forward and reverse remap tables. | | [`ImportTasksParams`](/packages/core/api/index#importtasksparams) | interface | | | [`ImportTasksResult`](/packages/core/api/index#importtasksresult) | interface | | | [`ValidationError`](/packages/core/api/index#validationerror) | interface | | | [`ValidationResult`](/packages/core/api/index#validationresult) | interface | | | [`AdrValidationError`](/packages/core/api/index#adrvalidationerror) | type | ValidationError — canonical name per ADR-017 spec | | [`AdrValidationResult`](/packages/core/api/index#adrvalidationresult) | type | ValidationResult — canonical name per ADR-017 spec | | [`TreeSitterLanguage`](/packages/core/api/index#treesitterlanguage) | type | Supported tree-sitter language identifiers. | | [`OutlineNode`](/packages/core/api/index#outlinenode) | interface | A symbol node in the outline tree, with optional children. | | [`SmartOutlineResult`](/packages/core/api/index#smartoutlineresult) | interface | Result of generating a smart outline for a file. | | [`SmartSearchResult`](/packages/core/api/index#smartsearchresult) | interface | A search result with relevance score. | | [`SmartSearchOptions`](/packages/core/api/index#smartsearchoptions) | interface | Options for smart\_search. | | [`SmartUnfoldResult`](/packages/core/api/index#smartunfoldresult) | interface | Result of unfolding a single symbol. | | [`ComplianceJsonlEntry`](/packages/core/api/index#compliancejsonlentry) | type | | | [`PayloadValidationResult`](/packages/core/api/index#payloadvalidationresult) | interface | Result of payload validation. | | [`BuildConfig`](/packages/core/api/index#buildconfig) | type | | | [`RepositoryConfig`](/packages/core/api/index#repositoryconfig) | type | | | [`IssueTemplate`](/packages/core/api/index#issuetemplate) | interface | Parsed issue template. | | [`AddIssueParams`](/packages/core/api/index#addissueparams) | interface | | | [`AddIssueResult`](/packages/core/api/index#addissueresult) | interface | | | [`RetryablePredicate`](/packages/core/api/index#retryablepredicate) | type | A predicate or pattern used to decide whether an error is retryable. -... | | [`RetryOptions`](/packages/core/api/index#retryoptions) | interface | Options that control retry behavior for `withRetry`. | | [`RetryContext`](/packages/core/api/index#retrycontext) | interface | Metadata attached to errors thrown after all retry attempts are exhausted. T... | | [`DecayResult`](/packages/core/api/index#decayresult) | interface | Result from applying temporal decay. | | [`ConsolidationResult`](/packages/core/api/index#consolidationresult) | interface | Result from consolidating memories. | | [`BrainMigrationResult`](/packages/core/api/index#brainmigrationresult) | interface | Result from a migration run. | | [`ResearchEntry`](/packages/core/api/index#researchentry) | interface | Research entry attached to a task. | | [`ManifestEntry`](/packages/core/api/index#manifestentry) | interface | Manifest entry (JSONL line). | | [`AddResearchOptions`](/packages/core/api/index#addresearchoptions) | interface | Options for adding research. | | [`ListResearchOptions`](/packages/core/api/index#listresearchoptions) | interface | Options for listing research. | | [`ManifestQueryOptions`](/packages/core/api/index#manifestqueryoptions) | interface | Manifest query options. | | [`ExtendedManifestEntry`](/packages/core/api/index#extendedmanifestentry) | interface | Extended manifest entry with optional fields used by the engine. | | [`ResearchFilter`](/packages/core/api/index#researchfilter) | interface | Research filter criteria used by the engine. | | [`ContradictionDetail`](/packages/core/api/index#contradictiondetail) | interface | Contradiction detail between two manifest entries. | | [`SupersededDetail`](/packages/core/api/index#supersededdetail) | interface | Superseded entry detail. | | [`ComplianceSummary`](/packages/core/api/index#compliancesummary) | interface | Compliance summary shape. | | [`OtelCaptureMode`](/packages/core/api/index#otelcapturemode) | type | OTel capture mode. | | [`OtelTokenDataPoint`](/packages/core/api/index#oteltokendatapoint) | interface | Token data point parsed from OTel metrics. | | [`AggregatedTokens`](/packages/core/api/index#aggregatedtokens) | interface | Aggregated token counts. | | [`ABVariant`](/packages/core/api/index#abvariant) | type | A/B test variant. | | [`ABEventType`](/packages/core/api/index#abeventtype) | type | A/B test event types. | | [`ABTestSummary`](/packages/core/api/index#abtestsummary) | interface | A/B test summary result. | | [`Severity`](/packages/core/api/index#severity) | enum | Violation severity levels. | | [`ManifestIntegrity`](/packages/core/api/index#manifestintegrity) | enum | Manifest integrity states. | | [`InstructionStability`](/packages/core/api/index#instructionstability) | enum | Instruction stability levels. | | [`SessionDegradation`](/packages/core/api/index#sessiondegradation) | enum | Session degradation levels. | | [`AgentReliability`](/packages/core/api/index#agentreliability) | enum | Agent reliability levels. | | [`MetricCategory`](/packages/core/api/index#metriccategory) | enum | Metric categories. | | [`MetricSource`](/packages/core/api/index#metricsource) | enum | Metric sources. | | [`AggregationPeriod`](/packages/core/api/index#aggregationperiod) | enum | Aggregation periods. | | [`TokenEventType`](/packages/core/api/index#tokeneventtype) | type | Token event types. | | [`TokenEvent`](/packages/core/api/index#tokenevent) | interface | A token usage event entry. | | [`TokenSessionSummary`](/packages/core/api/index#tokensessionsummary) | interface | Token session summary shape. | | [`VerificationResult`](/packages/core/api/index#verificationresult) | interface | Result of a backup verification operation. | | [`LogLevel`](/packages/core/api/index#loglevel) | type | Log entry severity level | | [`MigrationLogEntry`](/packages/core/api/index#migrationlogentry) | interface | Single migration log entry | | [`MigrationLoggerConfig`](/packages/core/api/index#migrationloggerconfig) | interface | Migration logger configuration | | [`PreflightResult`](/packages/core/api/index#preflightresult) | interface | Pre-flight check result. | | [`MigrationPhase`](/packages/core/api/index#migrationphase) | type | Migration phase - tracks current step in the migration process | | [`SourceFileInfo`](/packages/core/api/index#sourcefileinfo) | interface | Source file info with checksum for integrity verification | | [`MigrationProgress`](/packages/core/api/index#migrationprogress) | interface | Migration progress tracking | | [`MigrationState`](/packages/core/api/index#migrationstate) | interface | Complete migration state structure | | [`JsonFileValidation`](/packages/core/api/index#jsonfilevalidation) | interface | Result of validating a single JSON file. | | [`JsonValidationResult`](/packages/core/api/index#jsonvalidationresult) | interface | Complete validation result for all source files. | | [`SchemaVersion`](/packages/core/api/index#schemaversion) | interface | Schema version info. | | [`MigrationFn`](/packages/core/api/index#migrationfn) | type | Migration function signature. | | [`MigrationDef`](/packages/core/api/index#migrationdef) | interface | Migration definition. | | [`MigrationResult`](/packages/core/api/index#migrationresult) | interface | Migration run result. | | [`MigrationStatus`](/packages/core/api/index#migrationstatus) | interface | Status of all data files. | | [`NexusGraphNode`](/packages/core/api/index#nexusgraphnode) | interface | | | [`NexusGraphEdge`](/packages/core/api/index#nexusgraphedge) | interface | | | [`NexusGlobalGraph`](/packages/core/api/index#nexusglobalgraph) | interface | | | [`DepsResult`](/packages/core/api/index#depsresult) | interface | Result of a dependency query. | | [`DepsEntry`](/packages/core/api/index#depsentry) | interface | Single dependency entry with resolution status. | | [`CriticalPathResult`](/packages/core/api/index#criticalpathresult) | interface | Critical path result. | | [`BlockingAnalysisResult`](/packages/core/api/index#blockinganalysisresult) | interface | Blocking analysis result. | | [`OrphanEntry`](/packages/core/api/index#orphanentry) | interface | Orphan detection result. | | [`PinoLevel`](/packages/core/api/index#pinolevel) | type | Pino log levels as written by CLEO's logger (uppercase). | | [`PinoLogEntry`](/packages/core/api/index#pinologentry) | interface | A parsed pino log entry from a CLEO log file. Core fields are always present;... | | [`LogFileInfo`](/packages/core/api/index#logfileinfo) | interface | Metadata about a discovered log file. | | [`LogFilter`](/packages/core/api/index#logfilter) | interface | Filter criteria for log queries. All fields are optional; when multiple are p... | | [`LogQueryResult`](/packages/core/api/index#logqueryresult) | interface | Result of a log query operation. | | [`LogDiscoveryOptions`](/packages/core/api/index#logdiscoveryoptions) | interface | Options for discovering log files. | | [`LogSummary`](/packages/core/api/index#logsummary) | interface | Summary of log activity across files. | | [`RemoteConfig`](/packages/core/api/index#remoteconfig) | interface | Remote configuration. | | [`PushResult`](/packages/core/api/index#pushresult) | interface | Result of a push operation. | | [`PullResult`](/packages/core/api/index#pullresult) | interface | Result of a pull operation. | | [`RemoteInfo`](/packages/core/api/index#remoteinfo) | interface | Result of a remote list operation. | | [`ExecutionMode`](/packages/core/api/index#executionmode) | type | Execution mode for an operation | | [`GatewayType`](/packages/core/api/index#gatewaytype) | type | Gateway type | | [`PreferredChannel`](/packages/core/api/index#preferredchannel) | type | Preferred communication channel for token efficiency. CLI is the only dispatc... | | [`OperationCapability`](/packages/core/api/index#operationcapability) | interface | | | [`CapabilityReport`](/packages/core/api/index#capabilityreport) | interface | Capability report returned by system.doctor | | [`RateLimitConfig`](/packages/core/api/index#ratelimitconfig) | interface | Rate limiter configuration | | [`RateLimitResult`](/packages/core/api/index#ratelimitresult) | interface | Rate limit check result | | [`ContributionDecision`](/packages/core/api/index#contributiondecision) | interface | A contribution decision from an agent. | | [`ContributionConflict`](/packages/core/api/index#contributionconflict) | interface | Conflict between two agent decisions. | | [`ConsensusResult`](/packages/core/api/index#consensusresult) | interface | Consensus result from weighted voting. | | [`SkillsMpConfig`](/packages/core/api/index#skillsmpconfig) | interface | SkillsMP configuration. | | [`MarketplaceSkill`](/packages/core/api/index#marketplaceskill) | interface | Marketplace skill result (CLEO-specific shape). | | [`BatchSpawnEntry`](/packages/core/api/index#batchspawnentry) | interface | Result of a single spawn within a batch. | | [`BatchSpawnResult`](/packages/core/api/index#batchspawnresult) | interface | Result of a batch spawn operation. | | [`SessionInitResult`](/packages/core/api/index#sessioninitresult) | interface | Session init result. | | [`PauseStatus`](/packages/core/api/index#pausestatus) | interface | Pause status result. | | [`SkillSourceType`](/packages/core/api/index#skillsourcetype) | type | Source type classification for a skill directory. | | [`SkillSourceMode`](/packages/core/api/index#skillsourcemode) | type | Skill source mode. | | [`SkillSearchPath`](/packages/core/api/index#skillsearchpath) | interface | Search path entry with its origin. | | [`IssueSeverity`](/packages/core/api/index#issueseverity) | type | Validation issue severity. | | [`ValidationIssue`](/packages/core/api/index#validationissue) | interface | Single validation issue. | | [`SkillValidationResult`](/packages/core/api/index#skillvalidationresult) | interface | Validation result for a skill. | | [`SnapshotMeta`](/packages/core/api/index#snapshotmeta) | interface | Snapshot metadata. | | [`SnapshotTask`](/packages/core/api/index#snapshottask) | interface | Portable task representation (subset of Task, omitting local-only fields). | | [`Snapshot`](/packages/core/api/index#snapshot) | interface | Complete snapshot package. | | [`ImportResult`](/packages/core/api/index#importresult) | interface | Import result summary. | | [`SpawnCapability`](/packages/core/api/index#spawncapability) | type | Spawn capability type - subset of provider capabilities related to spawning | | [`WorkflowRuleMetric`](/packages/core/api/index#workflowrulemetric) | interface | Per-rule compliance breakdown. | | [`WorkflowComplianceReport`](/packages/core/api/index#workflowcompliancereport) | interface | Full workflow compliance report. | | [`ArchiveMetadata`](/packages/core/api/index#archivemetadata) | interface | Archive metadata that may be attached to archived task records. | | [`AnalyticsTask`](/packages/core/api/index#analyticstask) | interface | Archived task shape used internally for analytics. | | [`ArchiveReportType`](/packages/core/api/index#archivereporttype) | type | | | [`SummaryReportData`](/packages/core/api/index#summaryreportdata) | interface | Summary report result. | | [`PhaseGroupEntry`](/packages/core/api/index#phasegroupentry) | interface | Phase group entry. | | [`LabelFrequencyEntry`](/packages/core/api/index#labelfrequencyentry) | interface | Label frequency entry. | | [`PriorityGroupEntry`](/packages/core/api/index#prioritygroupentry) | interface | Priority group entry. | | [`CycleTimeDistribution`](/packages/core/api/index#cycletimedistribution) | interface | Cycle time distribution buckets. | | [`CycleTimePercentiles`](/packages/core/api/index#cycletimepercentiles) | interface | Cycle time percentiles. | | [`CycleTimesReportData`](/packages/core/api/index#cycletimesreportdata) | interface | Cycle times report result. | | [`DailyArchiveEntry`](/packages/core/api/index#dailyarchiveentry) | interface | Daily archive entry. | | [`MonthlyArchiveEntry`](/packages/core/api/index#monthlyarchiveentry) | interface | Monthly archive entry. | | [`TrendsReportData`](/packages/core/api/index#trendsreportdata) | interface | Trends report result. | | [`EmptyArchiveData`](/packages/core/api/index#emptyarchivedata) | interface | Empty archive sentinel (when totalArchived is 0). | | [`ArchiveReportDataMap`](/packages/core/api/index#archivereportdatamap) | type | Union type mapping report types to their data shapes. | | [`ArchiveAnalyticsResult`](/packages/core/api/index#archiveanalyticsresult) | interface | The envelope returned by analyzeArchive. | | [`AnalyzeArchiveOptions`](/packages/core/api/index#analyzearchiveoptions) | interface | Options for analyzeArchive. | | [`ArchiveStatsResult`](/packages/core/api/index#archivestatsresult) | interface | | | [`AuditIssue`](/packages/core/api/index#auditissue) | interface | | | [`AuditResult`](/packages/core/api/index#auditresult) | interface | | | [`BackupResult`](/packages/core/api/index#backupresult) | interface | | | [`RestoreResult`](/packages/core/api/index#restoreresult) | interface | | | [`BackupEntry`](/packages/core/api/index#backupentry) | interface | A single backup entry returned by listSystemBackups. | | [`CleanupResult`](/packages/core/api/index#cleanupresult) | interface | | | [`Platform`](/packages/core/api/index#platform) | type | Detected platform. | | [`SystemInfo`](/packages/core/api/index#systeminfo) | interface | Structured snapshot of the host system for diagnostics, error reports, and lo... | | [`CheckStatus`](/packages/core/api/index#checkstatus) | type | | | [`CheckResult`](/packages/core/api/index#checkresult) | interface | | | [`HealthCheck`](/packages/core/api/index#healthcheck) | interface | | | [`HealthResult`](/packages/core/api/index#healthresult) | interface | | | [`DiagnosticsCheck`](/packages/core/api/index#diagnosticscheck) | interface | | | [`DiagnosticsResult`](/packages/core/api/index#diagnosticsresult) | interface | | | [`DoctorCheck`](/packages/core/api/index#doctorcheck) | interface | | | [`DoctorReport`](/packages/core/api/index#doctorreport) | interface | | | [`FixResult`](/packages/core/api/index#fixresult) | interface | | | [`StartupState`](/packages/core/api/index#startupstate) | type | Outcome of a startup health check. Tells the caller exactly what state the sy... | | [`StartupHealthCheck`](/packages/core/api/index#startuphealthcheck) | interface | | | [`StartupHealthResult`](/packages/core/api/index#startuphealthresult) | interface | | | [`InjectGenerateResult`](/packages/core/api/index#injectgenerateresult) | interface | | | [`LabelsResult`](/packages/core/api/index#labelsresult) | interface | | | [`SystemMetricsResult`](/packages/core/api/index#systemmetricsresult) | interface | | | [`MigrateResult`](/packages/core/api/index#migrateresult) | interface | | | [`RuntimeDiagnostics`](/packages/core/api/index#runtimediagnostics) | interface | | | [`SafestopResult`](/packages/core/api/index#safestopresult) | interface | | | [`UncancelResult`](/packages/core/api/index#uncancelresult) | interface | | | [`TemplateSection`](/packages/core/api/index#templatesection) | interface | A single section/field within an issue template. | | [`IssueTemplate`](/packages/core/api/index#issuetemplate) | interface | A parsed issue template. | | [`TemplateConfig`](/packages/core/api/index#templateconfig) | interface | The full template config output. | | [`TemplateResult`](/packages/core/api/index#templateresult) | interface | Result type for template parser operations. | | [`ShellType`](/packages/core/api/index#shelltype) | type | Supported shell types. | | [`ChangelogSection`](/packages/core/api/index#changelogsection) | interface | Grouped changelog sections. | | [`CommandMeta`](/packages/core/api/index#commandmeta) | interface | Parsed command metadata. | | [`ParsedFlags`](/packages/core/api/index#parsedflags) | interface | Parsed flag state. | | [`InsertTask`](/packages/core/api/index#inserttask) | type | | | [`SelectTask`](/packages/core/api/index#selecttask) | type | | | [`InsertTaskDependency`](/packages/core/api/index#inserttaskdependency) | type | | | [`SelectTaskDependency`](/packages/core/api/index#selecttaskdependency) | type | | | [`InsertTaskRelation`](/packages/core/api/index#inserttaskrelation) | type | | | [`SelectTaskRelation`](/packages/core/api/index#selecttaskrelation) | type | | | [`InsertSession`](/packages/core/api/index#insertsession) | type | | | [`SelectSession`](/packages/core/api/index#selectsession) | type | | | [`InsertWorkHistory`](/packages/core/api/index#insertworkhistory) | type | | | [`SelectWorkHistory`](/packages/core/api/index#selectworkhistory) | type | | | [`InsertLifecyclePipeline`](/packages/core/api/index#insertlifecyclepipeline) | type | | | [`SelectLifecyclePipeline`](/packages/core/api/index#selectlifecyclepipeline) | type | | | [`InsertLifecycleStage`](/packages/core/api/index#insertlifecyclestage) | type | | | [`SelectLifecycleStage`](/packages/core/api/index#selectlifecyclestage) | type | | | [`InsertLifecycleGateResult`](/packages/core/api/index#insertlifecyclegateresult) | type | | | [`SelectLifecycleGateResult`](/packages/core/api/index#selectlifecyclegateresult) | type | | | [`InsertLifecycleEvidence`](/packages/core/api/index#insertlifecycleevidence) | type | | | [`SelectLifecycleEvidence`](/packages/core/api/index#selectlifecycleevidence) | type | | | [`InsertLifecycleTransition`](/packages/core/api/index#insertlifecycletransition) | type | | | [`SelectLifecycleTransition`](/packages/core/api/index#selectlifecycletransition) | type | | | [`InsertSchemaMeta`](/packages/core/api/index#insertschemameta) | type | | | [`SelectSchemaMeta`](/packages/core/api/index#selectschemameta) | type | | | [`InsertAuditLog`](/packages/core/api/index#insertauditlog) | type | | | [`SelectAuditLog`](/packages/core/api/index#selectauditlog) | type | | | [`AuditLogInsert`](/packages/core/api/index#auditloginsert) | type | Canonical type alias for audit log insert (T4848). | | [`AuditLogSelect`](/packages/core/api/index#auditlogselect) | type | Canonical type alias for audit log select (T4848). | | [`InsertTokenUsage`](/packages/core/api/index#inserttokenusage) | type | | | [`SelectTokenUsage`](/packages/core/api/index#selecttokenusage) | type | | | [`InsertArchitectureDecision`](/packages/core/api/index#insertarchitecturedecision) | type | | | [`SelectArchitectureDecision`](/packages/core/api/index#selectarchitecturedecision) | type | | | [`InsertManifestEntry`](/packages/core/api/index#insertmanifestentry) | type | | | [`SelectManifestEntry`](/packages/core/api/index#selectmanifestentry) | type | | | [`InsertPipelineManifest`](/packages/core/api/index#insertpipelinemanifest) | type | | | [`SelectPipelineManifest`](/packages/core/api/index#selectpipelinemanifest) | type | | | [`InsertReleaseManifest`](/packages/core/api/index#insertreleasemanifest) | type | | | [`SelectReleaseManifest`](/packages/core/api/index#selectreleasemanifest) | type | | | [`InsertExternalTaskLink`](/packages/core/api/index#insertexternaltasklink) | type | | | [`SelectExternalTaskLink`](/packages/core/api/index#selectexternaltasklink) | type | | | [`InsertAgentInstance`](/packages/core/api/index#insertagentinstance) | type | | | [`SelectAgentInstance`](/packages/core/api/index#selectagentinstance) | type | | | [`InsertAgentErrorLog`](/packages/core/api/index#insertagenterrorlog) | type | | | [`SelectAgentErrorLog`](/packages/core/api/index#selectagenterrorlog) | type | | | [`ManifestIntegrity`](/packages/core/api/index#manifestintegrity) | type | | | [`Severity`](/packages/core/api/index#severity) | type | | | [`ComplianceMetrics`](/packages/core/api/index#compliancemetrics) | interface | | | [`ManifestEntry`](/packages/core/api/index#manifestentry) | interface | | | [`TokenMetrics`](/packages/core/api/index#tokenmetrics) | interface | | | [`TokenEfficiency`](/packages/core/api/index#tokenefficiency) | interface | | | [`OrchestrationOverhead`](/packages/core/api/index#orchestrationoverhead) | interface | | | [`DriftIssue`](/packages/core/api/index#driftissue) | interface | | | [`DriftReport`](/packages/core/api/index#driftreport) | interface | | | [`CommandIndexEntry`](/packages/core/api/index#commandindexentry) | interface | | | [`CommandIndex`](/packages/core/api/index#commandindex) | interface | | | [`SchemaVersions`](/packages/core/api/index#schemaversions) | interface | | | [`FileHashes`](/packages/core/api/index#filehashes) | interface | | | [`ProjectCacheEntry`](/packages/core/api/index#projectcacheentry) | interface | | | [`DoctorProjectCache`](/packages/core/api/index#doctorprojectcache) | interface | | | [`ProjectDetail`](/packages/core/api/index#projectdetail) | interface | | | [`CategorizedProjects`](/packages/core/api/index#categorizedprojects) | interface | | | [`UserJourneyStage`](/packages/core/api/index#userjourneystage) | type | | | [`HealthSummary`](/packages/core/api/index#healthsummary) | interface | | | [`ValidationError`](/packages/core/api/index#validationerror) | interface | | | [`ValidationResult`](/packages/core/api/index#validationresult) | interface | | | [`Task`](/packages/core/api/index#task) | interface | | | [`TaskData`](/packages/core/api/index#taskdata) | interface | Task data shape for validation functions. | | [`ArchiveData`](/packages/core/api/index#archivedata) | interface | Archive data shape for validation functions. | | [`ComprehensiveValidationResult`](/packages/core/api/index#comprehensivevalidationresult) | interface | | | [`ManifestDoc`](/packages/core/api/index#manifestdoc) | interface | | | [`GapEntry`](/packages/core/api/index#gapentry) | interface | | | [`CoverageEntry`](/packages/core/api/index#coverageentry) | interface | | | [`GapReport`](/packages/core/api/index#gapreport) | interface | | | [`ManifestEntry`](/packages/core/api/index#manifestentry) | interface | | | [`ManifestViolation`](/packages/core/api/index#manifestviolation) | interface | | | [`ManifestValidationResult`](/packages/core/api/index#manifestvalidationresult) | interface | | | [`ComplianceEntry`](/packages/core/api/index#complianceentry) | interface | | | [`ProtocolViolation`](/packages/core/api/index#protocolviolation) | interface | | | [`ProtocolValidationResult`](/packages/core/api/index#protocolvalidationresult) | interface | | | [`GateName`](/packages/core/api/index#gatename) | type | | | [`AgentName`](/packages/core/api/index#agentname) | type | | | [`FailureLogEntry`](/packages/core/api/index#failurelogentry) | interface | | | [`VerificationGates`](/packages/core/api/index#verificationgates) | interface | | | [`Verification`](/packages/core/api/index#verification) | interface | | | [`VerificationStatus`](/packages/core/api/index#verificationstatus) | type | | | [`CircularValidationResult`](/packages/core/api/index#circularvalidationresult) | interface | | | [`TaskForVerification`](/packages/core/api/index#taskforverification) | interface | | | [`ProjectInfo`](/packages/core/api/index#projectinfo) | interface | Fields consumed by logging, audit, and correlation subsystems. | | [`BackfillOptions`](/packages/core/api/index#backfilloptions) | interface | Options for backfillTasks(). | | [`BackfillTaskChange`](/packages/core/api/index#backfilltaskchange) | interface | Summary of what was (or would be) changed for a single task. | | [`BackfillResult`](/packages/core/api/index#backfillresult) | interface | Overall result returned by backfillTasks(). | | [`RequirementLevel`](/packages/core/api/index#requirementlevel) | type | RFC 2119 requirement levels | | [`ViolationSeverity`](/packages/core/api/index#violationseverity) | type | Violation severity | | [`ProtocolRule`](/packages/core/api/index#protocolrule) | interface | Protocol rule definition | | [`ProtocolViolation`](/packages/core/api/index#protocolviolation) | interface | Protocol violation result | | [`ProtocolValidationResult`](/packages/core/api/index#protocolvalidationresult) | interface | Protocol validation result | | [`ErrorSeverity`](/packages/core/api/index#errorseverity) | enum | Error severity levels for protocol/gate validation. | | [`ErrorCategory`](/packages/core/api/index#errorcategory) | enum | Error category for grouping protocol/gate violations. | | [`ProtocolExitCode`](/packages/core/api/index#protocolexitcode) | enum | Protocol-specific exit codes used by the RCASD-IVTR+C enforcement system. Th... | | [`ProtocolRequest`](/packages/core/api/index#protocolrequest) | interface | Request shape used by the protocol enforcement system. Minimal interface matc... | | [`ProtocolResponse`](/packages/core/api/index#protocolresponse) | interface | Response shape used by the protocol enforcement system. | | [`ProtocolType`](/packages/core/api/index#protocoltype) | enum | Protocol types aligned with RCASD-IVTR+C lifecycle | | [`ViolationLogEntry`](/packages/core/api/index#violationlogentry) | interface | Violation log entry | | [`ChainFindCriteria`](/packages/core/api/index#chainfindcriteria) | interface | | | [`ProtocolViolation`](/packages/core/api/index#protocolviolation) | interface | Protocol violation entry. | | [`ProtocolValidationResult`](/packages/core/api/index#protocolvalidationresult) | interface | Protocol validation result. | | [`ManifestEntryInput`](/packages/core/api/index#manifestentryinput) | interface | Manifest entry structure for validation. | | [`ProtocolType`](/packages/core/api/index#protocoltype) | type | | | [`VotingMatrix`](/packages/core/api/index#votingmatrix) | interface | | | [`AdrStatus`](/packages/core/api/index#adrstatus) | type | ADR lifecycle status values. T260 | | [`ArchitectureDecisionOptions`](/packages/core/api/index#architecturedecisionoptions) | interface | Architecture decision options for validator. | | [`ValidationStageOptions`](/packages/core/api/index#validationstageoptions) | interface | Validation-stage options for validator. | | [`TestFramework`](/packages/core/api/index#testframework) | type | Project-agnostic test framework identifiers. The testing protocol is deliber... | | [`TestingOptions`](/packages/core/api/index#testingoptions) | interface | Testing-stage options for validator. | | [`BrainMaintenanceDecayResult`](/packages/core/api/index#brainmaintenancedecayresult) | interface | Temporal decay step result subset used in maintenance output. | | [`BrainMaintenanceConsolidationResult`](/packages/core/api/index#brainmaintenanceconsolidationresult) | interface | Memory consolidation step result subset used in maintenance output. | | [`BrainMaintenanceReconciliationResult`](/packages/core/api/index#brainmaintenancereconciliationresult) | interface | Orphaned reference reconciliation step result. | | [`BrainMaintenanceEmbeddingsResult`](/packages/core/api/index#brainmaintenanceembeddingsresult) | interface | Embedding backfill step result. | | [`BrainMaintenanceResult`](/packages/core/api/index#brainmaintenanceresult) | interface | Aggregated result from a full brain maintenance run. All counts are zero whe... | | [`BrainMaintenanceOptions`](/packages/core/api/index#brainmaintenanceoptions) | interface | Options for `runBrainMaintenance`. All `skip*` flags default to `false` — th... | | [`ClaudeMemMigrationResult`](/packages/core/api/index#claudememmigrationresult) | interface | Result from a claude-mem migration run. | | [`ClaudeMemMigrationOptions`](/packages/core/api/index#claudememmigrationoptions) | interface | Options for the claude-mem migration. | | [`BlockerNode`](/packages/core/api/index#blockernode) | interface | | | [`CausalTrace`](/packages/core/api/index#causaltrace) | interface | | | [`SimilarEntry`](/packages/core/api/index#similarentry) | interface | | | [`ManifestEntry`](/packages/core/api/index#manifestentry) | type | | | [`ModelProviderLookup`](/packages/core/api/index#modelproviderlookup) | interface | | | [`TokenMethod`](/packages/core/api/index#tokenmethod) | type | | | [`TokenConfidence`](/packages/core/api/index#tokenconfidence) | type | | | [`TokenTransport`](/packages/core/api/index#tokentransport) | type | | | [`TokenExchangeInput`](/packages/core/api/index#tokenexchangeinput) | interface | | | [`TokenMeasurement`](/packages/core/api/index#tokenmeasurement) | interface | | | [`TokenUsageFilters`](/packages/core/api/index#tokenusagefilters) | interface | | | [`TokenUsageSummary`](/packages/core/api/index#tokenusagesummary) | interface | | | [`SkillEntry`](/packages/core/api/index#skillentry) | interface | | | [`SkillContent`](/packages/core/api/index#skillcontent) | interface | | | [`HighImpactTask`](/packages/core/api/index#highimpacttask) | interface | | | [`SingleBlockerTask`](/packages/core/api/index#singleblockertask) | interface | | | [`CommonBlocker`](/packages/core/api/index#commonblocker) | interface | | | [`UnblockResult`](/packages/core/api/index#unblockresult) | interface | | | [`ValidationIssue`](/packages/core/api/index#validationissue) | interface | | | [`SpawnValidationResult`](/packages/core/api/index#spawnvalidationresult) | interface | | | [`ContextInjectionData`](/packages/core/api/index#contextinjectiondata) | interface | Data returned by context injection. | | [`CancelResult`](/packages/core/api/index#cancelresult) | interface | Result of a cancel operation. | | [`FlatTreeNode`](/packages/core/api/index#flattreenode) | interface | Tree node representation for task hierarchy. | | [`ComplexityFactor`](/packages/core/api/index#complexityfactor) | interface | Complexity factor contributing to a task's size estimate. | | [`AnalysisResult`](/packages/core/api/index#analysisresult) | interface | | | [`StoreEngine`](/packages/core/api/index#storeengine) | type | Store engine type. SQLite is the only supported engine (ADR-006). T4647 | | [`TaskFilters`](/packages/core/api/index#taskfilters) | interface | Common task filter options. | | [`SessionFilters`](/packages/core/api/index#sessionfilters) | interface | Common session filter options. | | [`StoreProvider`](/packages/core/api/index#storeprovider) | interface | Store provider interface. Backed by SQLite (ADR-006 canonical storage). | | [`MigrationResult`](/packages/core/api/index#migrationresult) | interface | Migration result. | | [`MigrationOptions`](/packages/core/api/index#migrationoptions) | interface | Options for migration. | | [`RepairAction`](/packages/core/api/index#repairaction) | interface | A single repair action with status. | | [`UpgradeAction`](/packages/core/api/index#upgradeaction) | interface | A single upgrade action with status. | | [`UpgradeResult`](/packages/core/api/index#upgraderesult) | interface | Full upgrade result. | | [`UpgradeSummary`](/packages/core/api/index#upgradesummary) | interface | Counts of what upgrade checked/applied/skipped. | | [`DiagnoseFinding`](/packages/core/api/index#diagnosefinding) | interface | A single diagnostic finding from --diagnose. | | [`DiagnoseResult`](/packages/core/api/index#diagnoseresult) | interface | Result from diagnoseUpgrade(). | | [`GateLayer`](/packages/core/api/index#gatelayer) | enum | Gate layer enumeration | | [`GateStatus`](/packages/core/api/index#gatestatus) | enum | Gate status for each layer | | [`GateViolation`](/packages/core/api/index#gateviolation) | interface | Violation detail for a specific gate layer | | [`LayerResult`](/packages/core/api/index#layerresult) | interface | Result from a single gate layer validation | | [`VerificationResult`](/packages/core/api/index#verificationresult) | interface | Complete verification result across all 4 layers | | [`OperationContext`](/packages/core/api/index#operationcontext) | interface | Operation context for gate validation | | [`WorkflowGateName`](/packages/core/api/index#workflowgatename) | enum | Workflow gate names per protocol specification Section 7.1 T3141 | | [`WorkflowGateStatus`](/packages/core/api/index#workflowgatestatus) | type | Workflow gate status values per Section 7.3 | | [`WorkflowGateAgent`](/packages/core/api/index#workflowgateagent) | type | Agent responsible for each gate per Section 7.2 | | [`WorkflowGateDefinition`](/packages/core/api/index#workflowgatedefinition) | interface | Individual workflow gate definition per Section 7.2 | | [`WorkflowGateState`](/packages/core/api/index#workflowgatestate) | interface | State of a single workflow gate | | [`JsonSchemaType`](/packages/core/api/index#jsonschematype) | type | | | [`JsonSchemaProperty`](/packages/core/api/index#jsonschemaproperty) | interface | | | [`JSONSchemaObject`](/packages/core/api/index#jsonschemaobject) | interface | | | [`CommanderArgSplit`](/packages/core/api/index#commanderargsplit) | interface | | | [`ValidationResult`](/packages/core/api/index#validationresult) | interface | Validation result | | [`ValidationError`](/packages/core/api/index#validationerror) | interface | Individual validation error | | [`SchemaType`](/packages/core/api/index#schematype) | type | Schema types that can be validated via AJV/JSON Schema. SQLite-backed types (... | | [`ComplianceEntry`](/packages/core/api/index#complianceentry) | interface | Compliance entry stored in COMPLIANCE.jsonl | | [`CoherenceIssue`](/packages/core/api/index#coherenceissue) | interface | Coherence issue found during graph validation. | | [`ValidateCheckDetail`](/packages/core/api/index#validatecheckdetail) | interface | | | [`ValidateReportResult`](/packages/core/api/index#validatereportresult) | interface | | | [`ValidateAndFixResult`](/packages/core/api/index#validateandfixresult) | interface | Result from validate + fix operation. | | [`CriticalPathNode`](/packages/core/api/index#criticalpathnode) | interface | | | [`CriticalPathResult`](/packages/core/api/index#criticalpathresult) | interface | | | [`SkillsPrecedenceConfig`](/packages/core/api/index#skillsprecedenceconfig) | interface | Configuration for skill precedence resolution across providers. | | [`ResolvedSkillPath`](/packages/core/api/index#resolvedskillpath) | interface | A resolved skill path with full provenance metadata. | | [`SkillInstallationContext`](/packages/core/api/index#skillinstallationcontext) | interface | Context for a skill installation operation. | | [`InProgressEpic`](/packages/core/api/index#inprogressepic) | interface | In-progress epic entry. | | [`ReadyTask`](/packages/core/api/index#readytask) | interface | Ready task entry with leverage analysis. | | [`BlockedTask`](/packages/core/api/index#blockedtask) | interface | Blocked task entry. | | [`OpenBug`](/packages/core/api/index#openbug) | interface | Open bug entry. | | [`PlanMetrics`](/packages/core/api/index#planmetrics) | interface | Planning metrics. | | [`PlanResult`](/packages/core/api/index#planresult) | interface | Composite planning view result. | | [`RcasdIndex`](/packages/core/api/index#rcasdindex) | interface | RCASD-INDEX.json top-level structure. | | [`IndexMeta`](/packages/core/api/index#indexmeta) | interface | Index metadata. | | [`IndexTotals`](/packages/core/api/index#indextotals) | interface | Aggregate counts. | | [`TaskAnchor`](/packages/core/api/index#taskanchor) | interface | Task-anchored RCASD artifact reference. | | [`SpecEntry`](/packages/core/api/index#specentry) | interface | Specification entry. | | [`ReportEntry`](/packages/core/api/index#reportentry) | interface | Report entry. | | [`PipelineState`](/packages/core/api/index#pipelinestate) | interface | Pipeline state. | | [`PipelineOperation`](/packages/core/api/index#pipelineoperation) | interface | Active pipeline operation. | | [`ChangeEntry`](/packages/core/api/index#changeentry) | interface | Change entry. | | [`ExecutionResult`](/packages/core/api/index#executionresult) | interface | The aggregate result of executing a CANT workflow. | | [`StepResult`](/packages/core/api/index#stepresult) | interface | The result of a single workflow statement execution. | | [`DiscretionContext`](/packages/core/api/index#discretioncontext) | interface | Context provided to a discretion evaluator for AI-judged conditions. | | [`ApprovalTokenStatus`](/packages/core/api/index#approvaltokenstatus) | type | Valid states for an approval token. | | [`ApprovalToken`](/packages/core/api/index#approvaltoken) | interface | An approval token for human-in-the-loop workflow gates. Tokens are bound to... | | [`TokenValidation`](/packages/core/api/index#tokenvalidation) | interface | Result of validating an approval token. | | [`JoinStrategy`](/packages/core/api/index#joinstrategy) | type | Join strategy for parallel block execution. | | [`SettleResult`](/packages/core/api/index#settleresult) | interface | Result of a parallel block execution with the settle strategy. | | [`ExecutionScope`](/packages/core/api/index#executionscope) | interface | Variable scope for workflow execution. | | [`DiscretionEvaluator`](/packages/core/api/index#discretionevaluator) | interface | Evaluates a discretion condition and returns a boolean judgment. | | [`ParallelArm`](/packages/core/api/index#parallelarm) | interface | A single parallel arm to execute. | | [`ParallelResult`](/packages/core/api/index#parallelresult) | interface | Result of a parallel block execution. | | [`WorkflowExecutorConfig`](/packages/core/api/index#workflowexecutorconfig) | interface | Configuration options for the workflow executor. | | [`ResumablePipeline`](/packages/core/api/index#resumablepipeline) | interface | Resumable pipeline information returned to callers. T4805 T4798 | | [`PipelineContext`](/packages/core/api/index#pipelinecontext) | interface | Pipeline context for session resume. T4805 | | [`StageContext`](/packages/core/api/index#stagecontext) | interface | Stage context within a pipeline. T4805 | | [`GateResultContext`](/packages/core/api/index#gateresultcontext) | interface | Gate result context. T4805 T4804 | | [`EvidenceContext`](/packages/core/api/index#evidencecontext) | interface | Evidence context. T4805 T4804 | | [`TransitionContext`](/packages/core/api/index#transitioncontext) | interface | Transition context. T4805 | | [`TaskContext`](/packages/core/api/index#taskcontext) | interface | Task context. T4805 | | [`ResumeResult`](/packages/core/api/index#resumeresult) | interface | Result of a resume operation. T4805 | | [`AutoResumeResult`](/packages/core/api/index#autoresumeresult) | interface | Auto-resume detection result. T4805 | | [`FindResumableOptions`](/packages/core/api/index#findresumableoptions) | interface | Options for finding resumable pipelines. T4805 | | [`SessionResumeCheckOptions`](/packages/core/api/index#sessionresumecheckoptions) | interface | Options for session start with resume check. T4805 | | [`SessionResumeCheckResult`](/packages/core/api/index#sessionresumecheckresult) | interface | Result of session resume check. T4805 | | [`PrereqCheck`](/packages/core/api/index#prereqcheck) | interface | Prerequisite check result. T4800 | | [`TransitionValidation`](/packages/core/api/index#transitionvalidation) | interface | Transition validation result. T4800 | | [`StageState`](/packages/core/api/index#stagestate) | interface | Stage state snapshot for state machine. T4800 | | [`StateMachineContext`](/packages/core/api/index#statemachinecontext) | interface | State machine context for a pipeline. T4800 | | [`StateTransition`](/packages/core/api/index#statetransition) | interface | State transition request. T4800 | | [`StateTransitionResult`](/packages/core/api/index#statetransitionresult) | interface | State transition result. T4800 | | [`ContextWindowInput`](/packages/core/api/index#contextwindowinput) | interface | Context window input from Claude Code. | | [`ContextStatus`](/packages/core/api/index#contextstatus) | type | Context status derived from input. | | [`HITLLevel`](/packages/core/api/index#hitllevel) | type | HITL warning level. | | [`HITLWarning`](/packages/core/api/index#hitlwarning) | interface | HITL warning entry. | | [`HITLWarningsResult`](/packages/core/api/index#hitlwarningsresult) | interface | HITL warnings result. | | [`StatuslineStatus`](/packages/core/api/index#statuslinestatus) | type | Statusline integration status. | | [`RoutingEntry`](/packages/core/api/index#routingentry) | interface | Routing entry describing the preferred channel for an operation. Derived fro... | | [`ProviderContext`](/packages/core/api/index#providercontext) | interface | Provider capability context for dynamic skill generation. | | [`IndexMap`](/packages/core/api/index#indexmap) | type | Cache index mapping labels/phases to task IDs. | | [`ImportPackageMeta`](/packages/core/api/index#importpackagemeta) | interface | Import package metadata extracted from the export file. | | [`ImportConflictType`](/packages/core/api/index#importconflicttype) | type | Import conflict types. | | [`ImportConflictResolution`](/packages/core/api/index#importconflictresolution) | type | Import conflict resolution strategies. | | [`ImportOptions`](/packages/core/api/index#importoptions) | interface | Import options for logging context. | | [`SortableTask`](/packages/core/api/index#sortabletask) | interface | Minimal task shape needed for topological sorting. | | [`PipelineStageTaskRow`](/packages/core/api/index#pipelinestagetaskrow) | interface | Row shape for pipeline + stage + task JOIN. | | [`PipelineStageRow`](/packages/core/api/index#pipelinestagerow) | interface | Row shape for pipeline + stage JOIN. | | [`InsertProjectRegistry`](/packages/core/api/index#insertprojectregistry) | type | | | [`SelectProjectRegistry`](/packages/core/api/index#selectprojectregistry) | type | | | [`InsertNexusAuditLog`](/packages/core/api/index#insertnexusauditlog) | type | | | [`SelectNexusAuditLog`](/packages/core/api/index#selectnexusauditlog) | type | | | [`InsertNexusSchemaMeta`](/packages/core/api/index#insertnexusschemameta) | type | | | [`SelectNexusSchemaMeta`](/packages/core/api/index#selectnexusschemameta) | type | | | [`AtomicityResult`](/packages/core/api/index#atomicityresult) | interface | | | [`AtomicityCriterion`](/packages/core/api/index#atomicitycriterion) | type | | | [`RelatesType`](/packages/core/api/index#relatestype) | type | Valid relationship types for relates entries. | | [`RelatesEntry`](/packages/core/api/index#relatesentry) | interface | A single relates entry. | | [`Severity`](/packages/core/api/index#severity) | type | Impact severity levels. | | [`DeleteWarning`](/packages/core/api/index#deletewarning) | interface | An impact warning. | | [`AffectedTasks`](/packages/core/api/index#affectedtasks) | interface | Affected tasks info. | | [`DeleteImpact`](/packages/core/api/index#deleteimpact) | interface | Impact analysis. | | [`DeletePreview`](/packages/core/api/index#deletepreview) | interface | Full preview result. | | [`ChildStrategy`](/packages/core/api/index#childstrategy) | type | Valid child handling strategies. | | [`StrategyResult`](/packages/core/api/index#strategyresult) | interface | Result from a strategy handler. | | [`DiscoveryMethod`](/packages/core/api/index#discoverymethod) | type | Discovery method. | | [`DiscoveryMatch`](/packages/core/api/index#discoverymatch) | interface | A single discovery match. | | [`PhaseProgress`](/packages/core/api/index#phaseprogress) | interface | Phase progress information. | | [`PhaseTransitionValidation`](/packages/core/api/index#phasetransitionvalidation) | interface | Validate a phase transition. | | [`StalenessThresholds`](/packages/core/api/index#stalenessthresholds) | interface | Staleness thresholds in days. | | [`StalenessLevel`](/packages/core/api/index#stalenesslevel) | type | Staleness classification. | | [`StalenessInfo`](/packages/core/api/index#stalenessinfo) | interface | Staleness assessment for a single task. | | [`StalenessSummary`](/packages/core/api/index#stalenesssummary) | interface | Get staleness summary statistics. | ## Other Exports | Symbol | Kind | Description | | ------------------------------------------------------------------------------------------------------------------ | -------- | ----------------------------------------------------------------------------------- | | [`logger.ts`](/packages/core/api/index#loggerts) | file | | | [`platform-paths.ts`](/packages/core/api/index#platform-pathsts) | file | | | [`paths.ts`](/packages/core/api/index#pathsts) | file | | | [`migration-manager.ts`](/packages/core/api/index#migration-managerts) | file | | | [`sqlite-backup.ts`](/packages/core/api/index#sqlite-backupts) | file | | | [`status-registry.ts`](/packages/core/api/index#status-registryts) | file | | | [`AGENT_INSTANCE_STATUSES`](/packages/core/api/index#agentinstancestatuses) | variable | Agent instance status values matching DB CHECK constraint. | | [`AGENT_TYPES`](/packages/core/api/index#agenttypes) | variable | Agent type values for classification. | | [`agentInstances`](/packages/core/api/index#agentinstances) | variable | | | [`agentErrorLog`](/packages/core/api/index#agenterrorlog) | variable | | | [`agent-schema.ts`](/packages/core/api/index#agent-schemats) | file | | | [`WARP_CHAIN_INSTANCE_STATUSES`](/packages/core/api/index#warpchaininstancestatuses) | variable | Chain instance status values. | | [`warpChains`](/packages/core/api/index#warpchains) | variable | Stored WarpChain definitions (serialized as JSON). | | [`warpChainInstances`](/packages/core/api/index#warpchaininstances) | variable | Runtime chain instances bound to epics. | | [`chain-schema.ts`](/packages/core/api/index#chain-schemats) | file | | | [`TASK_PRIORITIES`](/packages/core/api/index#taskpriorities) | variable | Task priorities matching DB CHECK constraint on tasks.priority. | | [`TASK_TYPES`](/packages/core/api/index#tasktypes) | variable | Task types matching DB CHECK constraint on tasks.type. | | [`TASK_SIZES`](/packages/core/api/index#tasksizes) | variable | Task size values matching DB CHECK constraint on tasks.size. | | [`LIFECYCLE_STAGE_NAMES`](/packages/core/api/index#lifecyclestagenames) | variable | Canonical lifecycle stage names matching DB CHECK constraint on lifecycle\_sta... | | [`LIFECYCLE_GATE_RESULTS`](/packages/core/api/index#lifecyclegateresults) | variable | Gate result values matching DB CHECK constraint on lifecycle\_gate\_results.res... | | [`LIFECYCLE_EVIDENCE_TYPES`](/packages/core/api/index#lifecycleevidencetypes) | variable | Evidence type values matching DB CHECK constraint on lifecycle\_evidence.type. | | [`TOKEN_USAGE_METHODS`](/packages/core/api/index#tokenusagemethods) | variable | Token measurement methods for central token telemetry. | | [`TOKEN_USAGE_CONFIDENCE`](/packages/core/api/index#tokenusageconfidence) | variable | Confidence levels for token measurements. | | [`TOKEN_USAGE_TRANSPORTS`](/packages/core/api/index#tokenusagetransports) | variable | Transport types for token telemetry. | | [`TASK_RELATION_TYPES`](/packages/core/api/index#taskrelationtypes) | variable | Task relation types matching DB CHECK constraint on task\_relations.relation\_t... | | [`LIFECYCLE_TRANSITION_TYPES`](/packages/core/api/index#lifecycletransitiontypes) | variable | Lifecycle transition types matching DB CHECK constraint on lifecycle\_transiti... | | [`EXTERNAL_LINK_TYPES`](/packages/core/api/index#externallinktypes) | variable | External task link types matching DB constraint on external\_task\_links.link\_t... | | [`SYNC_DIRECTIONS`](/packages/core/api/index#syncdirections) | variable | Sync direction types matching DB constraint on external\_task\_links.sync\_direc... | | [`tasks`](/packages/core/api/index#tasks) | variable | | | [`taskDependencies`](/packages/core/api/index#taskdependencies) | variable | | | [`taskRelations`](/packages/core/api/index#taskrelations) | variable | | | [`sessions`](/packages/core/api/index#sessions) | variable | | | [`taskWorkHistory`](/packages/core/api/index#taskworkhistory) | variable | | | [`lifecyclePipelines`](/packages/core/api/index#lifecyclepipelines) | variable | | | [`lifecycleStages`](/packages/core/api/index#lifecyclestages) | variable | | | [`lifecycleGateResults`](/packages/core/api/index#lifecyclegateresults) | variable | | | [`lifecycleEvidence`](/packages/core/api/index#lifecycleevidence) | variable | | | [`lifecycleTransitions`](/packages/core/api/index#lifecycletransitions) | variable | | | [`manifestEntries`](/packages/core/api/index#manifestentries) | variable | | | [`pipelineManifest`](/packages/core/api/index#pipelinemanifest) | variable | | | [`releaseManifests`](/packages/core/api/index#releasemanifests) | variable | | | [`schemaMeta`](/packages/core/api/index#schemameta) | variable | | | [`auditLog`](/packages/core/api/index#auditlog) | variable | Task change audit log — stores every add/update/complete/delete/archive opera... | | [`tokenUsage`](/packages/core/api/index#tokenusage) | variable | Central provider-aware token telemetry for CLI and external adapters. Stores... | | [`architectureDecisions`](/packages/core/api/index#architecturedecisions) | variable | Architecture Decision Records (ADRs) stored in the database. Corresponds to t... | | [`adrTaskLinks`](/packages/core/api/index#adrtasklinks) | variable | ADR-to-Task links (soft FK — tasks can be purged) | | [`adrRelations`](/packages/core/api/index#adrrelations) | variable | ADR cross-reference relationships | | [`externalTaskLinks`](/packages/core/api/index#externaltasklinks) | variable | Tracks links between CLEO tasks and external system tasks (Linear, Jira, GitH... | | [`statusRegistryTable`](/packages/core/api/index#statusregistrytable) | variable | | | [`tasks-schema.ts`](/packages/core/api/index#tasks-schemats) | file | | | [`BRAIN_DECISION_TYPES`](/packages/core/api/index#braindecisiontypes) | variable | Decision types from ADR-009. | | [`BRAIN_CONFIDENCE_LEVELS`](/packages/core/api/index#brainconfidencelevels) | variable | Confidence levels for decisions. | | [`BRAIN_OUTCOME_TYPES`](/packages/core/api/index#brainoutcometypes) | variable | Outcome types for decision tracking. | | [`BRAIN_PATTERN_TYPES`](/packages/core/api/index#brainpatterntypes) | variable | Pattern types for workflow analysis. | | [`BRAIN_IMPACT_LEVELS`](/packages/core/api/index#brainimpactlevels) | variable | Impact levels for patterns. | | [`BRAIN_LINK_TYPES`](/packages/core/api/index#brainlinktypes) | variable | Link types for cross-referencing BRAIN entries with tasks. | | [`BRAIN_OBSERVATION_TYPES`](/packages/core/api/index#brainobservationtypes) | variable | Observation types for claude-mem compatible observations. | | [`BRAIN_OBSERVATION_SOURCE_TYPES`](/packages/core/api/index#brainobservationsourcetypes) | variable | Source types for observations (how the observation was created). | | [`BRAIN_MEMORY_TYPES`](/packages/core/api/index#brainmemorytypes) | variable | Memory entity types for the links table. | | [`BRAIN_STICKY_STATUSES`](/packages/core/api/index#brainstickystatuses) | variable | Sticky note status values. | | [`BRAIN_STICKY_COLORS`](/packages/core/api/index#brainstickycolors) | variable | Sticky note colors. | | [`BRAIN_STICKY_PRIORITIES`](/packages/core/api/index#brainstickypriorities) | variable | Sticky note priority levels. | | [`brainDecisions`](/packages/core/api/index#braindecisions) | variable | | | [`brainPatterns`](/packages/core/api/index#brainpatterns) | variable | | | [`brainLearnings`](/packages/core/api/index#brainlearnings) | variable | | | [`brainObservations`](/packages/core/api/index#brainobservations) | variable | General-purpose observations — replaces claude-mem's observations table. | | [`brainStickyNotes`](/packages/core/api/index#brainstickynotes) | variable | Ephemeral sticky notes for quick capture before formal classification. | | [`brainMemoryLinks`](/packages/core/api/index#brainmemorylinks) | variable | Cross-references between BRAIN entries and tasks in tasks.db. | | [`brainSchemaMeta`](/packages/core/api/index#brainschemameta) | variable | | | [`BRAIN_NODE_TYPES`](/packages/core/api/index#brainnodetypes) | variable | Node types for PageIndex graph. | | [`BRAIN_EDGE_TYPES`](/packages/core/api/index#brainedgetypes) | variable | Edge types for PageIndex graph. | | [`brainPageNodes`](/packages/core/api/index#brainpagenodes) | variable | Documents/concepts as graph nodes for cross-document linking. | | [`brainPageEdges`](/packages/core/api/index#brainpageedges) | variable | Directed links between graph nodes. | | [`brain-schema.ts`](/packages/core/api/index#brain-schemats) | file | | | [`BRAIN_SCHEMA_VERSION`](/packages/core/api/index#brainschemaversion) | variable | Schema version for newly created brain databases. Single source of truth. | | [`brain-sqlite.ts`](/packages/core/api/index#brain-sqlitets) | file | | | [`projectRegistry`](/packages/core/api/index#projectregistry) | variable | Central registry of all CLEO projects known to the Nexus. | | [`nexusAuditLog`](/packages/core/api/index#nexusauditlog) | variable | Append-only audit log for all Nexus operations across projects. | | [`nexusSchemaMeta`](/packages/core/api/index#nexusschemameta) | variable | Key-value store for nexus.db schema versioning and metadata. | | [`nexus-schema.ts`](/packages/core/api/index#nexus-schemats) | file | | | [`NEXUS_SCHEMA_VERSION`](/packages/core/api/index#nexusschemaversion) | variable | Schema version for newly created nexus databases. Single source of truth. | | [`nexus-sqlite.ts`](/packages/core/api/index#nexus-sqlitets) | file | | | [`SQLITE_SCHEMA_VERSION`](/packages/core/api/index#sqliteschemaversion) | variable | Schema version for newly created databases. Single source of truth. | | [`sqlite.ts`](/packages/core/api/index#sqlitets) | file | | | [`parsers.ts`](/packages/core/api/index#parsersts) | file | | | [`converters.ts`](/packages/core/api/index#convertersts) | file | | | [`SIGNALDOCK_SCHEMA_VERSION`](/packages/core/api/index#signaldockschemaversion) | variable | Schema version for signaldock databases. | | [`signaldock-sqlite.ts`](/packages/core/api/index#signaldock-sqlitets) | file | | | [`cross-db-cleanup.ts`](/packages/core/api/index#cross-db-cleanupts) | file | | | [`ERROR_CATALOG`](/packages/core/api/index#errorcatalog) | variable | The unified error catalog. Keyed by numeric ExitCode value. | | [`error-catalog.ts`](/packages/core/api/index#error-catalogts) | file | | | [`errors.ts`](/packages/core/api/index#errorsts) | file | | | [`db-helpers.ts`](/packages/core/api/index#db-helpersts) | file | | | [`registry.ts`](/packages/core/api/index#registryts) | file | | | [`sqlite-data-accessor.ts`](/packages/core/api/index#sqlite-data-accessorts) | file | | | [`atomic.ts`](/packages/core/api/index#atomicts) | file | | | [`backup.ts`](/packages/core/api/index#backupts) | file | | | [`lock.ts`](/packages/core/api/index#lockts) | file | | | [`INTERNAL_HOOK_EVENTS`](/packages/core/api/index#internalhookevents) | variable | CLEO-local coordination events used by the autonomous runtime. These are int... | | [`CLEO_TO_CAAMP_HOOK_MAP`](/packages/core/api/index#cleotocaamphookmap) | variable | Mapping from CLEO internal lifecycle events to CAAMP canonical hook event nam... | | [`CLEO_INTERNAL_HOOK_MAP`](/packages/core/api/index#cleointernalhookmap) | variable | Internal CLEO lifecycle events that drive autonomous coordination. | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`hooks`](/packages/core/api/index#hooks) | variable | Singleton instance of the HookRegistry. Use this instance for all hook opera... | | [`registry.ts`](/packages/core/api/index#registryts) | file | | | [`json.ts`](/packages/core/api/index#jsonts) | file | | | [`git-checkpoint.ts`](/packages/core/api/index#git-checkpointts) | file | | | [`data-safety-central.ts`](/packages/core/api/index#data-safety-centralts) | file | | | [`safety-data-accessor.ts`](/packages/core/api/index#safety-data-accessorts) | file | | | [`data-accessor.ts`](/packages/core/api/index#data-accessorts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`data-safety.ts`](/packages/core/api/index#data-safetyts) | file | | | [`task-store.ts`](/packages/core/api/index#task-storets) | file | | | [`mvi-helpers.ts`](/packages/core/api/index#mvi-helpersts) | file | | | [`show.ts`](/packages/core/api/index#showts) | file | | | [`pagination.ts`](/packages/core/api/index#paginationts) | file | | | [`list.ts`](/packages/core/api/index#listts) | file | | | [`find.ts`](/packages/core/api/index#findts) | file | | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`parse.ts`](/packages/core/api/index#parsets) | file | | | [`link-pipeline.ts`](/packages/core/api/index#link-pipelinets) | file | | | [`sync.ts`](/packages/core/api/index#syncts) | file | | | [`evidence.ts`](/packages/core/api/index#evidencets) | file | | | [`rcasd-paths.ts`](/packages/core/api/index#rcasd-pathsts) | file | | | [`frontmatter.ts`](/packages/core/api/index#frontmatterts) | file | | | [`PIPELINE_STAGES`](/packages/core/api/index#pipelinestages) | variable | | | [`CONTRIBUTION_STAGE`](/packages/core/api/index#contributionstage) | variable | Cross-cutting contribution stage. Not part of the pipeline execution order, b... | | [`STAGE_DEFINITIONS`](/packages/core/api/index#stagedefinitions) | variable | Canonical stage definitions with complete metadata. T4800 T4799 - Replaces... | | [`STAGE_ORDER`](/packages/core/api/index#stageorder) | variable | Stage order mapping for quick lookups. T4800 | | [`STAGE_PREREQUISITES`](/packages/core/api/index#stageprerequisites) | variable | Prerequisites for each stage - which stages must be completed before entering... | | [`TRANSITION_RULES`](/packages/core/api/index#transitionrules) | variable | Allowed transitions between stages. By default, stages progress linearly. Th... | | [`STAGE_COUNT`](/packages/core/api/index#stagecount) | variable | Total number of stages in the pipeline. T4800 | | [`FIRST_STAGE`](/packages/core/api/index#firststage) | variable | First stage in the pipeline. T4800 | | [`LAST_STAGE`](/packages/core/api/index#laststage) | variable | Last stage in the pipeline. T4800 | | [`PLANNING_STAGES`](/packages/core/api/index#planningstages) | variable | Planning stages. T4800 | | [`DECISION_STAGES`](/packages/core/api/index#decisionstages) | variable | Decision stages. T4800 | | [`EXECUTION_STAGES`](/packages/core/api/index#executionstages) | variable | Execution stages (canonical). T4800 | | [`VALIDATION_STAGES`](/packages/core/api/index#validationstages) | variable | Validation stages. T4800 | | [`DELIVERY_STAGES`](/packages/core/api/index#deliverystages) | variable | Delivery stages. T4800 | | [`stages.ts`](/packages/core/api/index#stagests) | file | | | [`stage-artifacts.ts`](/packages/core/api/index#stage-artifactsts) | file | | | [`SKILL_NAME_MAP`](/packages/core/api/index#skillnamemap) | variable | Canonical skill name mapping (user-friendly to ct-prefixed). | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`discovery.ts`](/packages/core/api/index#discoveryts) | file | | | [`token.ts`](/packages/core/api/index#tokents) | file | | | [`dispatch.ts`](/packages/core/api/index#dispatchts) | file | | | [`STAGE_SKILL_MAP`](/packages/core/api/index#stageskillmap) | variable | Canonical mapping from RCASD-IVTR+C pipeline stages to the primary skill that... | | [`TIER_0_SKILLS`](/packages/core/api/index#tier0skills) | variable | Tier 0 skills — always loaded alongside the stage-specific skill. -... | | [`stage-guidance.ts`](/packages/core/api/index#stage-guidancets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`THRESHOLDS`](/packages/core/api/index#thresholds) | variable | Context alert thresholds (percentage of context window). | | [`context-alert.ts`](/packages/core/api/index#context-alertts) | file | | | [`output.ts`](/packages/core/api/index#outputts) | file | | | [`error-registry.ts`](/packages/core/api/index#error-registryts) | file | | | [`test-db-helper.ts`](/packages/core/api/index#test-db-helperts) | file | | | [`hierarchy.ts`](/packages/core/api/index#hierarchyts) | file | | | [`ENFORCEMENT_PROFILES`](/packages/core/api/index#enforcementprofiles) | variable | | | [`hierarchy-policy.ts`](/packages/core/api/index#hierarchy-policyts) | file | | | [`STRICTNESS_PRESETS`](/packages/core/api/index#strictnesspresets) | variable | All three strictness presets. strict — block on missing AC, require sessio... | | [`config.ts`](/packages/core/api/index#configts) | file | | | [`handler-helpers.ts`](/packages/core/api/index#handler-helpersts) | file | | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`decisions.ts`](/packages/core/api/index#decisionsts) | file | | | [`handoff.ts`](/packages/core/api/index#handoffts) | file | | | [`brain-accessor.ts`](/packages/core/api/index#brain-accessorts) | file | | | [`typed-query.ts`](/packages/core/api/index#typed-queryts) | file | | | [`brain-row-types.ts`](/packages/core/api/index#brain-row-typests) | file | | | [`embedding-local.ts`](/packages/core/api/index#embedding-localts) | file | | | [`EMBEDDING_DIMENSIONS`](/packages/core/api/index#embeddingdimensions) | variable | Matches the brain\_embeddings vec0 table: FLOAT\[384]. | | [`brain-embedding.ts`](/packages/core/api/index#brain-embeddingts) | file | | | [`brain-similarity.ts`](/packages/core/api/index#brain-similarityts) | file | | | [`brain-search.ts`](/packages/core/api/index#brain-searchts) | file | | | [`memory-bridge.ts`](/packages/core/api/index#memory-bridgets) | file | | | [`memory-bridge-refresh.ts`](/packages/core/api/index#memory-bridge-refreshts) | file | | | [`brain-retrieval.ts`](/packages/core/api/index#brain-retrievalts) | file | | | [`audit.ts`](/packages/core/api/index#auditts) | file | | | [`learnings.ts`](/packages/core/api/index#learningsts) | file | | | [`session-grade.ts`](/packages/core/api/index#session-gradets) | file | | | [`adapter-registry.ts`](/packages/core/api/index#adapter-registryts) | file | | | [`discovery.ts`](/packages/core/api/index#discoveryts) | file | | | [`manager.ts`](/packages/core/api/index#managerts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`session-memory-bridge.ts`](/packages/core/api/index#session-memory-bridgets) | file | | | [`decisions.ts`](/packages/core/api/index#decisionsts) | file | | | [`patterns.ts`](/packages/core/api/index#patternsts) | file | | | [`auto-extract.ts`](/packages/core/api/index#auto-extractts) | file | | | [`session-hooks.ts`](/packages/core/api/index#session-hooksts) | file | | | [`task-hooks.ts`](/packages/core/api/index#task-hooksts) | file | | | [`error-hooks.ts`](/packages/core/api/index#error-hooksts) | file | | | [`file-hooks.ts`](/packages/core/api/index#file-hooksts) | file | | | [`notification-hooks.ts`](/packages/core/api/index#notification-hooksts) | file | | | [`work-capture-hooks.ts`](/packages/core/api/index#work-capture-hooksts) | file | | | [`agent-hooks.ts`](/packages/core/api/index#agent-hooksts) | file | | | [`context-hooks.ts`](/packages/core/api/index#context-hooksts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`assumptions.ts`](/packages/core/api/index#assumptionsts) | file | | | [`brain-links.ts`](/packages/core/api/index#brain-linksts) | file | | | [`session-memory.ts`](/packages/core/api/index#session-memoryts) | file | | | [`deps-ready.ts`](/packages/core/api/index#deps-readyts) | file | | | [`pipeline.ts`](/packages/core/api/index#pipelinets) | file | | | [`briefing.ts`](/packages/core/api/index#briefingts) | file | | | [`find.ts`](/packages/core/api/index#findts) | file | | | [`session-archive.ts`](/packages/core/api/index#session-archivets) | file | | | [`session-cleanup.ts`](/packages/core/api/index#session-cleanupts) | file | | | [`session-drift.ts`](/packages/core/api/index#session-driftts) | file | | | [`session-history.ts`](/packages/core/api/index#session-historyts) | file | | | [`session-show.ts`](/packages/core/api/index#session-showts) | file | | | [`session-stats.ts`](/packages/core/api/index#session-statsts) | file | | | [`session-suspend.ts`](/packages/core/api/index#session-suspendts) | file | | | [`session-switch.ts`](/packages/core/api/index#session-switchts) | file | | | [`session-view.ts`](/packages/core/api/index#session-viewts) | file | | | [`provider-detection.ts`](/packages/core/api/index#provider-detectionts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`session-enforcement.ts`](/packages/core/api/index#session-enforcementts) | file | | | [`enforcement.ts`](/packages/core/api/index#enforcementts) | file | | | [`TASK_PIPELINE_STAGES`](/packages/core/api/index#taskpipelinestages) | variable | Ordered pipeline stages (RCASD-IVTR+C). This matches lifecycle/stages.ts PIPE... | | [`pipeline-stage.ts`](/packages/core/api/index#pipeline-stagets) | file | | | [`EPIC_MIN_AC`](/packages/core/api/index#epicminac) | variable | Minimum acceptance criteria count required for epic creation in strict mode. | | [`TASK_MIN_AC`](/packages/core/api/index#taskminac) | variable | Minimum acceptance criteria count for regular tasks. | | [`epic-enforcement.ts`](/packages/core/api/index#epic-enforcementts) | file | | | [`VALID_PRIORITIES`](/packages/core/api/index#validpriorities) | variable | Valid string priority values. | | [`add.ts`](/packages/core/api/index#addts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`audit-prune.ts`](/packages/core/api/index#audit-prunets) | file | | | [`hash.ts`](/packages/core/api/index#hashts) | file | | | [`json-schema-validator.ts`](/packages/core/api/index#json-schema-validatorts) | file | | | [`schema-management.ts`](/packages/core/api/index#schema-managementts) | file | | | [`schema-integrity.ts`](/packages/core/api/index#schema-integrityts) | file | | | [`project-detect.ts`](/packages/core/api/index#project-detectts) | file | | | [`injection.ts`](/packages/core/api/index#injectionts) | file | | | [`REQUIRED_CLEO_SUBDIRS`](/packages/core/api/index#requiredcleosubdirs) | variable | Required subdirectories under .cleo/. | | [`CLEO_GITIGNORE_FALLBACK`](/packages/core/api/index#cleogitignorefallback) | variable | Embedded fallback for .cleo/.gitignore content (deny-by-default). | | [`REQUIRED_GLOBAL_SUBDIRS`](/packages/core/api/index#requiredglobalsubdirs) | variable | Required subdirectories under the global \~/.cleo/ home. These are infrastruct... | | [`STALE_GLOBAL_ENTRIES`](/packages/core/api/index#staleglobalentries) | variable | Stale entries that must NOT exist at the global \~/.cleo/ level. These were pr... | | [`scaffold.ts`](/packages/core/api/index#scaffoldts) | file | | | [`discovery.ts`](/packages/core/api/index#discoveryts) | file | | | [`MANAGED_HOOKS`](/packages/core/api/index#managedhooks) | variable | Git hooks managed by CLEO. | | [`hooks.ts`](/packages/core/api/index#hooksts) | file | | | [`agent-outputs.ts`](/packages/core/api/index#agent-outputsts) | file | | | [`migrate-json-to-sqlite.ts`](/packages/core/api/index#migrate-json-to-sqlitets) | file | | | [`registry.ts`](/packages/core/api/index#registryts) | file | | | [`stack.ts`](/packages/core/api/index#stackts) | file | | | [`architecture.ts`](/packages/core/api/index#architecturets) | file | | | [`structure.ts`](/packages/core/api/index#structurets) | file | | | [`conventions.ts`](/packages/core/api/index#conventionsts) | file | | | [`testing.ts`](/packages/core/api/index#testingts) | file | | | [`integrations.ts`](/packages/core/api/index#integrationsts) | file | | | [`concerns.ts`](/packages/core/api/index#concernsts) | file | | | [`store.ts`](/packages/core/api/index#storets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`init.ts`](/packages/core/api/index#initts) | file | | | [`bootstrap.ts`](/packages/core/api/index#bootstrapts) | file | | | [`caamp-init.ts`](/packages/core/api/index#caamp-initts) | file | | | [`export.ts`](/packages/core/api/index#exportts) | file | | | [`import.ts`](/packages/core/api/index#importts) | file | | | [`execution-learning.ts`](/packages/core/api/index#execution-learningts) | file | | | [`MAX_TASKS_PER_AGENT`](/packages/core/api/index#maxtasksperagent) | variable | Maximum number of tasks that can be concurrently assigned to one agent. Used... | | [`agent-registry.ts`](/packages/core/api/index#agent-registryts) | file | | | [`capacity.ts`](/packages/core/api/index#capacityts) | file | | | [`HEARTBEAT_INTERVAL_MS`](/packages/core/api/index#heartbeatintervalms) | variable | Default heartbeat interval (30 seconds) per BRAIN spec. | | [`STALE_THRESHOLD_MS`](/packages/core/api/index#stalethresholdms) | variable | Default staleness threshold: 3 minutes without a heartbeat. | | [`health-monitor.ts`](/packages/core/api/index#health-monitorts) | file | | | [`DEFAULT_RETRY_POLICY`](/packages/core/api/index#defaultretrypolicy) | variable | Default retry policy matching the BRAIN specification. | | [`retry.ts`](/packages/core/api/index#retryts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`prediction.ts`](/packages/core/api/index#predictionts) | file | | | [`adaptive-validation.ts`](/packages/core/api/index#adaptive-validationts) | file | | | [`dependency-check.ts`](/packages/core/api/index#dependency-checkts) | file | | | [`graph-ops.ts`](/packages/core/api/index#graph-opsts) | file | | | [`impact.ts`](/packages/core/api/index#impactts) | file | | | [`patterns.ts`](/packages/core/api/index#patternsts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`query.ts`](/packages/core/api/index#queryts) | file | | | [`discover.ts`](/packages/core/api/index#discoverts) | file | | | [`permissions.ts`](/packages/core/api/index#permissionsts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`getTaskHistory`](/packages/core/api/index#gettaskhistory) | variable | Get task work history (canonical verb alias for dispatch layer). T5323 | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`complete.ts`](/packages/core/api/index#completets) | file | | | [`validation-rules.ts`](/packages/core/api/index#validation-rulests) | file | | | [`update.ts`](/packages/core/api/index#updatets) | file | | | [`workspace.ts`](/packages/core/api/index#workspacets) | file | | | [`deps.ts`](/packages/core/api/index#depsts) | file | | | [`analyze.ts`](/packages/core/api/index#analyzets) | file | | | [`context.ts`](/packages/core/api/index#contextts) | file | | | [`hierarchy.ts`](/packages/core/api/index#hierarchyts) | file | | | [`waves.ts`](/packages/core/api/index#wavests) | file | | | [`status.ts`](/packages/core/api/index#statusts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`link-store.ts`](/packages/core/api/index#link-storets) | file | | | [`reconciliation-engine.ts`](/packages/core/api/index#reconciliation-enginets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`artifacts.ts`](/packages/core/api/index#artifactsts) | file | | | [`changelog-writer.ts`](/packages/core/api/index#changelog-writerts) | file | | | [`release-config.ts`](/packages/core/api/index#release-configts) | file | | | [`channel.ts`](/packages/core/api/index#channelts) | file | | | [`SUPPORTED_PLATFORMS`](/packages/core/api/index#supportedplatforms) | variable | All supported platforms. | | [`ci.ts`](/packages/core/api/index#cits) | file | | | [`github-pr.ts`](/packages/core/api/index#github-prts) | file | | | [`guards.ts`](/packages/core/api/index#guardsts) | file | | | [`version-bump.ts`](/packages/core/api/index#version-bumpts) | file | | | [`release-manifest.ts`](/packages/core/api/index#release-manifestts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`SNAPSHOT_VERSION`](/packages/core/api/index#snapshotversion) | variable | Version of the snapshot schema. Increment on breaking changes. | | [`snapshot.ts`](/packages/core/api/index#snapshotts) | file | | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`archive.ts`](/packages/core/api/index#archivets) | file | | | [`convert.ts`](/packages/core/api/index#convertts) | file | | | [`id.ts`](/packages/core/api/index#idts) | file | | | [`create.ts`](/packages/core/api/index#createts) | file | | | [`list.ts`](/packages/core/api/index#listts) | file | | | [`purge.ts`](/packages/core/api/index#purgets) | file | | | [`show.ts`](/packages/core/api/index#showts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`archive.ts`](/packages/core/api/index#archivets) | file | | | [`delete.ts`](/packages/core/api/index#deletets) | file | | | [`cleo.ts`](/packages/core/api/index#cleots) | file | | | [`CORE_PROTECTED_FILES`](/packages/core/api/index#coreprotectedfiles) | variable | Configuration files relative to .cleo/ that MUST remain tracked by project gi... | | [`constants.ts`](/packages/core/api/index#constantsts) | file | | | [`engine-result.ts`](/packages/core/api/index#engine-resultts) | file | | | [`export.ts`](/packages/core/api/index#exportts) | file | | | [`export-tasks.ts`](/packages/core/api/index#export-tasksts) | file | | | [`help.ts`](/packages/core/api/index#helpts) | file | | | [`transfer-types.ts`](/packages/core/api/index#transfer-typests) | file | | | [`import-remap.ts`](/packages/core/api/index#import-remapts) | file | | | [`import-tasks.ts`](/packages/core/api/index#import-tasksts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`find.ts`](/packages/core/api/index#findts) | file | | | [`list.ts`](/packages/core/api/index#listts) | file | | | [`show.ts`](/packages/core/api/index#showts) | file | | | [`validate.ts`](/packages/core/api/index#validatets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`adapter.ts`](/packages/core/api/index#adapterts) | file | | | [`capability-check.ts`](/packages/core/api/index#capability-checkts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`SUPPORTED_EXTENSIONS`](/packages/core/api/index#supportedextensions) | variable | All supported file extensions. | | [`SUPPORTED_LANGUAGES`](/packages/core/api/index#supportedlanguages) | variable | All supported languages. | | [`tree-sitter-languages.ts`](/packages/core/api/index#tree-sitter-languagests) | file | | | [`parser.ts`](/packages/core/api/index#parserts) | file | | | [`outline.ts`](/packages/core/api/index#outlinets) | file | | | [`search.ts`](/packages/core/api/index#searchts) | file | | | [`unfold.ts`](/packages/core/api/index#unfoldts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`store.ts`](/packages/core/api/index#storets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`conduit-client.ts`](/packages/core/api/index#conduit-clientts) | file | | | [`http-transport.ts`](/packages/core/api/index#http-transportts) | file | | | [`local-transport.ts`](/packages/core/api/index#local-transportts) | file | | | [`sse-transport.ts`](/packages/core/api/index#sse-transportts) | file | | | [`factory.ts`](/packages/core/api/index#factoryts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`HookPayloadSchema`](/packages/core/api/index#hookpayloadschema) | variable | Zod schema for `HookPayload`. | | [`SessionStartPayloadSchema`](/packages/core/api/index#sessionstartpayloadschema) | variable | Zod schema for `SessionStartPayload`. | | [`OnSessionStartPayloadSchema`](/packages/core/api/index#onsessionstartpayloadschema) | variable | | | [`SessionEndPayloadSchema`](/packages/core/api/index#sessionendpayloadschema) | variable | Zod schema for `SessionEndPayload`. | | [`OnSessionEndPayloadSchema`](/packages/core/api/index#onsessionendpayloadschema) | variable | | | [`PreToolUsePayloadSchema`](/packages/core/api/index#pretoolusepayloadschema) | variable | Zod schema for `PreToolUsePayload`. | | [`OnToolStartPayloadSchema`](/packages/core/api/index#ontoolstartpayloadschema) | variable | | | [`PostToolUsePayloadSchema`](/packages/core/api/index#posttoolusepayloadschema) | variable | Zod schema for `PostToolUsePayload`. | | [`OnToolCompletePayloadSchema`](/packages/core/api/index#ontoolcompletepayloadschema) | variable | | | [`NotificationPayloadSchema`](/packages/core/api/index#notificationpayloadschema) | variable | Zod schema for `NotificationPayload`. | | [`OnFileChangePayloadSchema`](/packages/core/api/index#onfilechangepayloadschema) | variable | | | [`PostToolUseFailurePayloadSchema`](/packages/core/api/index#posttoolusefailurepayloadschema) | variable | Zod schema for `PostToolUseFailurePayload`. | | [`OnErrorPayloadSchema`](/packages/core/api/index#onerrorpayloadschema) | variable | | | [`PromptSubmitPayloadSchema`](/packages/core/api/index#promptsubmitpayloadschema) | variable | Zod schema for `PromptSubmitPayload`. | | [`OnPromptSubmitPayloadSchema`](/packages/core/api/index#onpromptsubmitpayloadschema) | variable | | | [`ResponseCompletePayloadSchema`](/packages/core/api/index#responsecompletepayloadschema) | variable | Zod schema for `ResponseCompletePayload`. | | [`OnResponseCompletePayloadSchema`](/packages/core/api/index#onresponsecompletepayloadschema) | variable | | | [`SubagentStartPayloadSchema`](/packages/core/api/index#subagentstartpayloadschema) | variable | Zod schema for `SubagentStartPayload`. | | [`SubagentStopPayloadSchema`](/packages/core/api/index#subagentstoppayloadschema) | variable | Zod schema for `SubagentStopPayload`. | | [`PreCompactPayloadSchema`](/packages/core/api/index#precompactpayloadschema) | variable | Zod schema for `PreCompactPayload`. | | [`PostCompactPayloadSchema`](/packages/core/api/index#postcompactpayloadschema) | variable | Zod schema for `PostCompactPayload`. | | [`ConfigChangePayloadSchema`](/packages/core/api/index#configchangepayloadschema) | variable | Zod schema for `ConfigChangePayload`. | | [`OnWorkAvailablePayloadSchema`](/packages/core/api/index#onworkavailablepayloadschema) | variable | Zod schema for `OnWorkAvailablePayload`. | | [`OnAgentSpawnPayloadSchema`](/packages/core/api/index#onagentspawnpayloadschema) | variable | Zod schema for `OnAgentSpawnPayload`. | | [`OnAgentCompletePayloadSchema`](/packages/core/api/index#onagentcompletepayloadschema) | variable | Zod schema for `OnAgentCompletePayload`. | | [`OnCascadeStartPayloadSchema`](/packages/core/api/index#oncascadestartpayloadschema) | variable | Zod schema for `OnCascadeStartPayload`. | | [`OnPatrolPayloadSchema`](/packages/core/api/index#onpatrolpayloadschema) | variable | Zod schema for `OnPatrolPayload`. | | [`payload-schemas.ts`](/packages/core/api/index#payload-schemasts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`BUILD_CONFIG`](/packages/core/api/index#buildconfig) | variable | BUILD CONFIGURATION - AUTO-GENERATED FILE This file is generated by dev/gene... | | [`build-config.ts`](/packages/core/api/index#build-configts) | file | | | [`diagnostics.ts`](/packages/core/api/index#diagnosticsts) | file | | | [`template-parser.ts`](/packages/core/api/index#template-parserts) | file | | | [`create.ts`](/packages/core/api/index#createts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`retry.ts`](/packages/core/api/index#retryts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`brain-lifecycle.ts`](/packages/core/api/index#brain-lifecyclets) | file | | | [`brain-migration.ts`](/packages/core/api/index#brain-migrationts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | Research commands and manifest operations. T4465 T4454 | | [`common.ts`](/packages/core/api/index#commonts) | file | | | [`otel-integration.ts`](/packages/core/api/index#otel-integrationts) | file | | | [`ab-test.ts`](/packages/core/api/index#ab-testts) | file | | | [`aggregation.ts`](/packages/core/api/index#aggregationts) | file | | | [`enums.ts`](/packages/core/api/index#enumsts) | file | | | [`token-estimation.ts`](/packages/core/api/index#token-estimationts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`checksum.ts`](/packages/core/api/index#checksumts) | file | | | [`logger.ts`](/packages/core/api/index#loggerts) | file | | | [`storage-preflight.ts`](/packages/core/api/index#storage-preflightts) | file | | | [`preflight.ts`](/packages/core/api/index#preflightts) | file | | | [`state.ts`](/packages/core/api/index#statets) | file | | | [`validate.ts`](/packages/core/api/index#validatets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`deps.ts`](/packages/core/api/index#depsts) | file | | | [`transfer.ts`](/packages/core/api/index#transferts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`PINO_LEVEL_VALUES`](/packages/core/api/index#pinolevelvalues) | variable | Numeric pino level values for comparison. | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`log-filter.ts`](/packages/core/api/index#log-filterts) | file | | | [`log-parser.ts`](/packages/core/api/index#log-parserts) | file | | | [`log-reader.ts`](/packages/core/api/index#log-readerts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`phase.ts`](/packages/core/api/index#phasets) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`capability-matrix.ts`](/packages/core/api/index#capability-matrixts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`id-generator.ts`](/packages/core/api/index#id-generatorts) | file | | | [`VALID_DOMAINS`](/packages/core/api/index#validdomains) | variable | Known enum values for CLEO domains | | [`VALID_GATEWAYS`](/packages/core/api/index#validgateways) | variable | | | [`VALID_MANIFEST_STATUSES`](/packages/core/api/index#validmanifeststatuses) | variable | | | [`VALID_LIFECYCLE_STAGE_STATUSES`](/packages/core/api/index#validlifecyclestagestatuses) | variable | | | [`ALL_VALID_STATUSES`](/packages/core/api/index#allvalidstatuses) | variable | | | [`VALID_PRIORITIES`](/packages/core/api/index#validpriorities) | variable | | | [`DEFAULT_RATE_LIMITS`](/packages/core/api/index#defaultratelimits) | variable | Default rate limit configurations per operation type | | [`input-sanitization.ts`](/packages/core/api/index#input-sanitizationts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`config.ts`](/packages/core/api/index#configts) | file | | | [`install.ts`](/packages/core/api/index#installts) | file | | | [`registry.ts`](/packages/core/api/index#registryts) | file | | | [`subagent.ts`](/packages/core/api/index#subagentts) | file | | | [`install.ts`](/packages/core/api/index#installts) | file | | | [`contribution.ts`](/packages/core/api/index#contributionts) | file | | | [`research.ts`](/packages/core/api/index#researchts) | file | | | [`resolver.ts`](/packages/core/api/index#resolverts) | file | | | [`marketplace.ts`](/packages/core/api/index#marketplacets) | file | | | [`spawn.ts`](/packages/core/api/index#spawnts) | file | | | [`startup.ts`](/packages/core/api/index#startupts) | file | | | [`validator.ts`](/packages/core/api/index#validatorts) | file | | | [`skill-paths.ts`](/packages/core/api/index#skill-pathsts) | file | | | [`test-utility.ts`](/packages/core/api/index#test-utilityts) | file | | | [`validation.ts`](/packages/core/api/index#validationts) | file | | | [`version.ts`](/packages/core/api/index#versionts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`spawnRegistry`](/packages/core/api/index#spawnregistry) | variable | Singleton registry instance. Use this instance for all spawn adapter registr... | | [`adapter-registry.ts`](/packages/core/api/index#adapter-registryts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`workflow-telemetry.ts`](/packages/core/api/index#workflow-telemetryts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`archive-analytics.ts`](/packages/core/api/index#archive-analyticsts) | file | | | [`archive-stats.ts`](/packages/core/api/index#archive-statsts) | file | | | [`audit.ts`](/packages/core/api/index#auditts) | file | | | [`backup.ts`](/packages/core/api/index#backupts) | file | | | [`cleanup.ts`](/packages/core/api/index#cleanupts) | file | | | [`file-utils.ts`](/packages/core/api/index#file-utilsts) | file | | | [`PLATFORM`](/packages/core/api/index#platform) | variable | Cached platform value. | | [`MINIMUM_NODE_MAJOR`](/packages/core/api/index#minimumnodemajor) | variable | Minimum required Node.js major version. | | [`platform.ts`](/packages/core/api/index#platformts) | file | | | [`checks.ts`](/packages/core/api/index#checksts) | file | | | [`health.ts`](/packages/core/api/index#healthts) | file | | | [`inject-generate.ts`](/packages/core/api/index#inject-generatets) | file | | | [`labels.ts`](/packages/core/api/index#labelsts) | file | | | [`metrics.ts`](/packages/core/api/index#metricsts) | file | | | [`migrate.ts`](/packages/core/api/index#migratets) | file | | | [`runtime.ts`](/packages/core/api/index#runtimets) | file | | | [`safestop.ts`](/packages/core/api/index#safestopts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`parser.ts`](/packages/core/api/index#parserts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`ALIASES_VERSION`](/packages/core/api/index#aliasesversion) | variable | Current alias version. | | [`aliases.ts`](/packages/core/api/index#aliasests) | file | | | [`changelog.ts`](/packages/core/api/index#changelogts) | file | | | [`command-registry.ts`](/packages/core/api/index#command-registryts) | file | | | [`flags.ts`](/packages/core/api/index#flagsts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`taskStatusSchema`](/packages/core/api/index#taskstatusschema) | variable | Zod enum schema for task statuses. | | [`taskPrioritySchema`](/packages/core/api/index#taskpriorityschema) | variable | Zod enum schema for task priorities. | | [`taskTypeSchema`](/packages/core/api/index#tasktypeschema) | variable | Zod enum schema for task types. | | [`taskSizeSchema`](/packages/core/api/index#tasksizeschema) | variable | Zod enum schema for task sizes. | | [`sessionStatusSchema`](/packages/core/api/index#sessionstatusschema) | variable | Zod enum schema for session statuses. | | [`lifecyclePipelineStatusSchema`](/packages/core/api/index#lifecyclepipelinestatusschema) | variable | Zod enum schema for lifecycle pipeline statuses. | | [`lifecycleStageStatusSchema`](/packages/core/api/index#lifecyclestagestatusschema) | variable | Zod enum schema for lifecycle stage statuses. | | [`lifecycleStageNameSchema`](/packages/core/api/index#lifecyclestagenameschema) | variable | Zod enum schema for lifecycle stage names. | | [`lifecycleGateResultSchema`](/packages/core/api/index#lifecyclegateresultschema) | variable | Zod enum schema for lifecycle gate results. | | [`lifecycleEvidenceTypeSchema`](/packages/core/api/index#lifecycleevidencetypeschema) | variable | Zod enum schema for lifecycle evidence types. | | [`adrStatusSchema`](/packages/core/api/index#adrstatusschema) | variable | Zod enum schema for ADR statuses. | | [`gateStatusSchema`](/packages/core/api/index#gatestatusschema) | variable | Zod enum schema for gate statuses. | | [`manifestStatusSchema`](/packages/core/api/index#manifeststatusschema) | variable | Zod enum schema for manifest statuses. | | [`tokenUsageMethodSchema`](/packages/core/api/index#tokenusagemethodschema) | variable | Zod enum schema for token usage measurement methods. | | [`tokenUsageConfidenceSchema`](/packages/core/api/index#tokenusageconfidenceschema) | variable | Zod enum schema for token usage confidence levels. | | [`tokenUsageTransportSchema`](/packages/core/api/index#tokenusagetransportschema) | variable | Zod enum schema for token usage transports. | | [`taskRelationTypeSchema`](/packages/core/api/index#taskrelationtypeschema) | variable | Zod enum schema for task relation types. | | [`externalLinkTypeSchema`](/packages/core/api/index#externallinktypeschema) | variable | Zod enum schema for external task link types. | | [`syncDirectionSchema`](/packages/core/api/index#syncdirectionschema) | variable | Zod enum schema for sync directions. | | [`lifecycleTransitionTypeSchema`](/packages/core/api/index#lifecycletransitiontypeschema) | variable | Zod enum schema for lifecycle transition types. | | [`brainObservationTypeSchema`](/packages/core/api/index#brainobservationtypeschema) | variable | Zod enum schema for brain observation types. | | [`brainObservationSourceTypeSchema`](/packages/core/api/index#brainobservationsourcetypeschema) | variable | Zod enum schema for brain observation source types. | | [`brainDecisionTypeSchema`](/packages/core/api/index#braindecisiontypeschema) | variable | Zod enum schema for brain decision types. | | [`brainConfidenceLevelSchema`](/packages/core/api/index#brainconfidencelevelschema) | variable | Zod enum schema for brain confidence levels. | | [`brainOutcomeTypeSchema`](/packages/core/api/index#brainoutcometypeschema) | variable | Zod enum schema for brain outcome types. | | [`brainPatternTypeSchema`](/packages/core/api/index#brainpatterntypeschema) | variable | Zod enum schema for brain pattern types. | | [`brainImpactLevelSchema`](/packages/core/api/index#brainimpactlevelschema) | variable | Zod enum schema for brain impact levels. | | [`brainLinkTypeSchema`](/packages/core/api/index#brainlinktypeschema) | variable | Zod enum schema for brain link types. | | [`brainMemoryTypeSchema`](/packages/core/api/index#brainmemorytypeschema) | variable | Zod enum schema for brain memory entity types. | | [`brainStickyStatusSchema`](/packages/core/api/index#brainstickystatusschema) | variable | Zod enum schema for brain sticky note statuses. | | [`brainStickyColorSchema`](/packages/core/api/index#brainstickycolorschema) | variable | Zod enum schema for brain sticky note colors. | | [`brainStickyPrioritySchema`](/packages/core/api/index#brainstickypriorityschema) | variable | Zod enum schema for brain sticky note priorities. | | [`brainNodeTypeSchema`](/packages/core/api/index#brainnodetypeschema) | variable | Zod enum schema for brain page node types. | | [`brainEdgeTypeSchema`](/packages/core/api/index#brainedgetypeschema) | variable | Zod enum schema for brain page edge types. | | [`insertTaskSchema`](/packages/core/api/index#inserttaskschema) | variable | | | [`selectTaskSchema`](/packages/core/api/index#selecttaskschema) | variable | | | [`insertTaskDependencySchema`](/packages/core/api/index#inserttaskdependencyschema) | variable | | | [`selectTaskDependencySchema`](/packages/core/api/index#selecttaskdependencyschema) | variable | | | [`insertTaskRelationSchema`](/packages/core/api/index#inserttaskrelationschema) | variable | | | [`selectTaskRelationSchema`](/packages/core/api/index#selecttaskrelationschema) | variable | | | [`insertSessionSchema`](/packages/core/api/index#insertsessionschema) | variable | | | [`selectSessionSchema`](/packages/core/api/index#selectsessionschema) | variable | | | [`insertWorkHistorySchema`](/packages/core/api/index#insertworkhistoryschema) | variable | | | [`selectWorkHistorySchema`](/packages/core/api/index#selectworkhistoryschema) | variable | | | [`insertLifecyclePipelineSchema`](/packages/core/api/index#insertlifecyclepipelineschema) | variable | | | [`selectLifecyclePipelineSchema`](/packages/core/api/index#selectlifecyclepipelineschema) | variable | | | [`insertLifecycleStageSchema`](/packages/core/api/index#insertlifecyclestageschema) | variable | | | [`selectLifecycleStageSchema`](/packages/core/api/index#selectlifecyclestageschema) | variable | | | [`insertLifecycleGateResultSchema`](/packages/core/api/index#insertlifecyclegateresultschema) | variable | | | [`selectLifecycleGateResultSchema`](/packages/core/api/index#selectlifecyclegateresultschema) | variable | | | [`insertLifecycleEvidenceSchema`](/packages/core/api/index#insertlifecycleevidenceschema) | variable | | | [`selectLifecycleEvidenceSchema`](/packages/core/api/index#selectlifecycleevidenceschema) | variable | | | [`insertLifecycleTransitionSchema`](/packages/core/api/index#insertlifecycletransitionschema) | variable | | | [`selectLifecycleTransitionSchema`](/packages/core/api/index#selectlifecycletransitionschema) | variable | | | [`insertSchemaMetaSchema`](/packages/core/api/index#insertschemametaschema) | variable | | | [`selectSchemaMetaSchema`](/packages/core/api/index#selectschemametaschema) | variable | | | [`insertAuditLogSchema`](/packages/core/api/index#insertauditlogschema) | variable | Zod schema for validating audit log insert payloads. T4848 | | [`AuditLogInsertSchema`](/packages/core/api/index#auditloginsertschema) | variable | Canonical named export for audit log insert schema (T4848). Alias for insertA... | | [`selectAuditLogSchema`](/packages/core/api/index#selectauditlogschema) | variable | | | [`AuditLogSelectSchema`](/packages/core/api/index#auditlogselectschema) | variable | Canonical named export for audit log select schema (T4848). Alias for selectA... | | [`insertArchitectureDecisionSchema`](/packages/core/api/index#insertarchitecturedecisionschema) | variable | | | [`selectArchitectureDecisionSchema`](/packages/core/api/index#selectarchitecturedecisionschema) | variable | | | [`insertTokenUsageSchema`](/packages/core/api/index#inserttokenusageschema) | variable | | | [`selectTokenUsageSchema`](/packages/core/api/index#selecttokenusageschema) | variable | | | [`insertManifestEntrySchema`](/packages/core/api/index#insertmanifestentryschema) | variable | | | [`selectManifestEntrySchema`](/packages/core/api/index#selectmanifestentryschema) | variable | | | [`insertPipelineManifestSchema`](/packages/core/api/index#insertpipelinemanifestschema) | variable | | | [`selectPipelineManifestSchema`](/packages/core/api/index#selectpipelinemanifestschema) | variable | | | [`insertReleaseManifestSchema`](/packages/core/api/index#insertreleasemanifestschema) | variable | | | [`selectReleaseManifestSchema`](/packages/core/api/index#selectreleasemanifestschema) | variable | | | [`insertExternalTaskLinkSchema`](/packages/core/api/index#insertexternaltasklinkschema) | variable | | | [`selectExternalTaskLinkSchema`](/packages/core/api/index#selectexternaltasklinkschema) | variable | | | [`insertAgentInstanceSchema`](/packages/core/api/index#insertagentinstanceschema) | variable | | | [`selectAgentInstanceSchema`](/packages/core/api/index#selectagentinstanceschema) | variable | | | [`insertAgentErrorLogSchema`](/packages/core/api/index#insertagenterrorlogschema) | variable | | | [`selectAgentErrorLogSchema`](/packages/core/api/index#selectagenterrorlogschema) | variable | | | [`agentInstanceStatusSchema`](/packages/core/api/index#agentinstancestatusschema) | variable | Zod enum schema for agent instance statuses. | | [`agentTypeSchema`](/packages/core/api/index#agenttypeschema) | variable | Zod enum schema for agent types. | | [`validation-schemas.ts`](/packages/core/api/index#validation-schemasts) | file | | | [`compliance.ts`](/packages/core/api/index#compliancets) | file | | | [`docs-sync.ts`](/packages/core/api/index#docs-syncts) | file | | | [`CACHE_VERSION`](/packages/core/api/index#cacheversion) | variable | | | [`CACHE_TTL_SECONDS`](/packages/core/api/index#cachettlseconds) | variable | | | [`project-cache.ts`](/packages/core/api/index#project-cachets) | file | | | [`utils.ts`](/packages/core/api/index#utilsts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`VALID_OPERATIONS`](/packages/core/api/index#validoperations) | variable | | | [`FIELD_LIMITS`](/packages/core/api/index#fieldlimits) | variable | Field length limits matching the Bash implementation. | | [`VAL_SUCCESS`](/packages/core/api/index#valsuccess) | variable | Validation result exit codes. | | [`VAL_SCHEMA_ERROR`](/packages/core/api/index#valschemaerror) | variable | | | [`VAL_SEMANTIC_ERROR`](/packages/core/api/index#valsemanticerror) | variable | | | [`VAL_BOTH_ERRORS`](/packages/core/api/index#valbotherrors) | variable | | | [`engine.ts`](/packages/core/api/index#enginets) | file | | | [`gap-check.ts`](/packages/core/api/index#gap-checkts) | file | | | [`manifest.ts`](/packages/core/api/index#manifestts) | file | | | [`protocol-common.ts`](/packages/core/api/index#protocol-commonts) | file | | | [`VERIFICATION_GATE_ORDER`](/packages/core/api/index#verificationgateorder) | variable | | | [`VERIFICATION_VALID_AGENTS`](/packages/core/api/index#verificationvalidagents) | variable | | | [`verification.ts`](/packages/core/api/index#verificationts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`project-info.ts`](/packages/core/api/index#project-infots) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | Backfill module: retroactively add AC and verification metadata to existing t... | | [`PROTOCOL_RULES`](/packages/core/api/index#protocolrules) | variable | Protocol rule registry | | [`protocol-rules.ts`](/packages/core/api/index#protocol-rulests) | file | | | [`protocol-types.ts`](/packages/core/api/index#protocol-typests) | file | | | [`protocolEnforcer`](/packages/core/api/index#protocolenforcer) | variable | Default protocol enforcer instance | | [`protocol-enforcement.ts`](/packages/core/api/index#protocol-enforcementts) | file | | | [`provider-hooks.ts`](/packages/core/api/index#provider-hooksts) | file | | | [`chain-validation.ts`](/packages/core/api/index#chain-validationts) | file | | | [`chain-store.ts`](/packages/core/api/index#chain-storets) | file | | | [`PROTOCOL_TYPES`](/packages/core/api/index#protocoltypes) | variable | All supported protocol types. The canonical set covers all 9 RCASD-IVTR pipe... | | [`PROTOCOL_EXIT_CODES`](/packages/core/api/index#protocolexitcodes) | variable | Map protocol types to exit codes. Pipeline protocols use the 60-67 orchestra... | | [`protocol-validators.ts`](/packages/core/api/index#protocol-validatorsts) | file | | | [`DEFAULT_CHAIN_ID`](/packages/core/api/index#defaultchainid) | variable | | | [`DEFAULT_PROTOCOL_STAGE_MAP`](/packages/core/api/index#defaultprotocolstagemap) | variable | Stage mapping for protocol validation gates in the default chain. Cross-cutt... | | [`default-chain.ts`](/packages/core/api/index#default-chaints) | file | | | [`tessera-engine.ts`](/packages/core/api/index#tessera-enginets) | file | | | [`brain-maintenance.ts`](/packages/core/api/index#brain-maintenancets) | file | | | [`claude-mem-migration.ts`](/packages/core/api/index#claude-mem-migrationts) | file | | | [`brain-reasoning.ts`](/packages/core/api/index#brain-reasoningts) | file | | | [`engine-compat.ts`](/packages/core/api/index#engine-compatts) | file | | | [`pipeline-manifest-sqlite.ts`](/packages/core/api/index#pipeline-manifest-sqlitets) | file | | | [`model-provider-registry.ts`](/packages/core/api/index#model-provider-registryts) | file | | | [`token-service.ts`](/packages/core/api/index#token-servicets) | file | | | [`parallel.ts`](/packages/core/api/index#parallelts) | file | | | [`skill-ops.ts`](/packages/core/api/index#skill-opsts) | file | | | [`unblock.ts`](/packages/core/api/index#unblockts) | file | | | [`validate-spawn.ts`](/packages/core/api/index#validate-spawnts) | file | | | [`context-inject.ts`](/packages/core/api/index#context-injectts) | file | | | [`session-id.ts`](/packages/core/api/index#session-idts) | file | | | [`session-store.ts`](/packages/core/api/index#session-storets) | file | | | [`relates.ts`](/packages/core/api/index#relatests) | file | | | [`cancel-ops.ts`](/packages/core/api/index#cancel-opsts) | file | | | [`task-ops.ts`](/packages/core/api/index#task-opsts) | file | | | [`analyze.ts`](/packages/core/api/index#analyzets) | file | | | [`labels.ts`](/packages/core/api/index#labelsts) | file | | | [`provider.ts`](/packages/core/api/index#providerts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`migration-sqlite.ts`](/packages/core/api/index#migration-sqlitets) | file | | | [`repair.ts`](/packages/core/api/index#repairts) | file | | | [`upgrade.ts`](/packages/core/api/index#upgradets) | file | | | [`GATE_SEQUENCE`](/packages/core/api/index#gatesequence) | variable | Export gate layer sequence for external use | | [`WORKFLOW_GATE_DEFINITIONS`](/packages/core/api/index#workflowgatedefinitions) | variable | Complete workflow gate definitions per Section 7.2 | | [`WORKFLOW_GATE_SEQUENCE`](/packages/core/api/index#workflowgatesequence) | variable | Ordered workflow gate sequence per Section 7.1 | | [`operation-verification-gates.ts`](/packages/core/api/index#operation-verification-gatests) | file | | | [`GATE_VALIDATION_RULES`](/packages/core/api/index#gatevalidationrules) | variable | Validation rule definitions for reuse | | [`VALID_WORKFLOW_AGENTS`](/packages/core/api/index#validworkflowagents) | variable | Valid workflow gate agent names per Section 7.2 | | [`VALID_WORKFLOW_GATE_STATUSES`](/packages/core/api/index#validworkflowgatestatuses) | variable | Valid workflow gate status values per Section 7.3 | | [`operation-gate-validators.ts`](/packages/core/api/index#operation-gate-validatorsts) | file | | | [`param-utils.ts`](/packages/core/api/index#param-utilsts) | file | | | [`_shared.ts`](/packages/core/api/index#sharedts) | file | | | [`architecture-decision.ts`](/packages/core/api/index#architecture-decisionts) | file | | | [`artifact-publish.ts`](/packages/core/api/index#artifact-publishts) | file | | | [`consensus.ts`](/packages/core/api/index#consensusts) | file | | | [`contribution.ts`](/packages/core/api/index#contributionts) | file | | | [`decomposition.ts`](/packages/core/api/index#decompositionts) | file | | | [`implementation.ts`](/packages/core/api/index#implementationts) | file | | | [`provenance.ts`](/packages/core/api/index#provenancets) | file | | | [`release.ts`](/packages/core/api/index#releasets) | file | | | [`research.ts`](/packages/core/api/index#researchts) | file | | | [`specification.ts`](/packages/core/api/index#specificationts) | file | | | [`testing.ts`](/packages/core/api/index#testingts) | file | | | [`validation.ts`](/packages/core/api/index#validationts) | file | | | [`schema-validator.ts`](/packages/core/api/index#schema-validatorts) | file | | | [`validate-ops.ts`](/packages/core/api/index#validate-opsts) | file | | | [`bootstrap.ts`](/packages/core/api/index#bootstrapts) | file | | | [`critical-path.ts`](/packages/core/api/index#critical-pathts) | file | | | [`precedence-types.ts`](/packages/core/api/index#precedence-typests) | file | | | [`precedence-integration.ts`](/packages/core/api/index#precedence-integrationts) | file | | | [`plan.ts`](/packages/core/api/index#plants) | file | | | [`credentials.ts`](/packages/core/api/index#credentialsts) | file | | | [`agent-registry-accessor.ts`](/packages/core/api/index#agent-registry-accessorts) | file | | | [`internal.ts`](/packages/core/api/index#internalts) | file | | | [`audit-prune.test.ts`](/packages/core/api/index#audit-prunetestts) | file | | | [`caamp-skill-install.test.ts`](/packages/core/api/index#caamp-skill-installtestts) | file | | | [`cli-parity.test.ts`](/packages/core/api/index#cli-paritytestts) | file | | | [`config.test.ts`](/packages/core/api/index#configtestts) | file | | | [`error-catalog.test.ts`](/packages/core/api/index#error-catalogtestts) | file | | | [`hooks.test.ts`](/packages/core/api/index#hookstestts) | file | | | [`human-output.test.ts`](/packages/core/api/index#human-outputtestts) | file | | | [`index-api-compat.test.ts`](/packages/core/api/index#index-api-compattestts) | file | | | [`init-e2e.test.ts`](/packages/core/api/index#init-e2etestts) | file | | | [`injection-chain.test.ts`](/packages/core/api/index#injection-chaintestts) | file | | | [`injection-mvi-tiers.test.ts`](/packages/core/api/index#injection-mvi-tierstestts) | file | | | [`injection-shared.test.ts`](/packages/core/api/index#injection-sharedtestts) | file | | | [`logger.test.ts`](/packages/core/api/index#loggertestts) | file | | | [`paths.test.ts`](/packages/core/api/index#pathstestts) | file | | | [`project-info.test.ts`](/packages/core/api/index#project-infotestts) | file | | | [`rcasd-index.ts`](/packages/core/api/index#rcasd-indexts) | file | | | [`rcsd-pipeline-e2e.test.ts`](/packages/core/api/index#rcsd-pipeline-e2etestts) | file | | | [`remote.test.ts`](/packages/core/api/index#remotetestts) | file | | | [`scaffold.test.ts`](/packages/core/api/index#scaffoldtestts) | file | | | [`schema-management.test.ts`](/packages/core/api/index#schema-managementtestts) | file | | | [`schema.test.ts`](/packages/core/api/index#schematestts) | file | | | [`sharing.test.ts`](/packages/core/api/index#sharingtestts) | file | | | [`snapshot.test.ts`](/packages/core/api/index#snapshottestts) | file | | | [`upgrade.test.ts`](/packages/core/api/index#upgradetestts) | file | | | [`discovery.test.ts`](/packages/core/api/index#discoverytestts) | file | | | [`manager.test.ts`](/packages/core/api/index#managertestts) | file | | | [`agent-registry.test.ts`](/packages/core/api/index#agent-registrytestts) | file | | | [`capacity.test.ts`](/packages/core/api/index#capacitytestts) | file | | | [`execution-learning.test.ts`](/packages/core/api/index#execution-learningtestts) | file | | | [`health-monitor.test.ts`](/packages/core/api/index#health-monitortestts) | file | | | [`registry.test.ts`](/packages/core/api/index#registrytestts) | file | | | [`retry.test.ts`](/packages/core/api/index#retrytestts) | file | | | [`types.ts`](/packages/core/api/index#typests) | file | | | [`approval.ts`](/packages/core/api/index#approvalts) | file | | | [`context-builder.ts`](/packages/core/api/index#context-builderts) | file | | | [`discretion.ts`](/packages/core/api/index#discretionts) | file | | | [`parallel-runner.ts`](/packages/core/api/index#parallel-runnerts) | file | | | [`workflow-executor.ts`](/packages/core/api/index#workflow-executorts) | file | | | [`index.ts`](/packages/core/api/index#indexts) | file | | | [`cant-agent-parse.test.ts`](/packages/core/api/index#cant-agent-parsetestts) | file | | | [`summary.ts`](/packages/core/api/index#summaryts) | file | | | [`sync.test.ts`](/packages/core/api/index#synctestts) | file | | | [`dual-api-e2e.test.ts`](/packages/core/api/index#dual-api-e2etestts) | file | | | [`local-credential-flow.test.ts`](/packages/core/api/index#local-credential-flowtestts) | file | | | [`local-transport.test.ts`](/packages/core/api/index#local-transporttestts) | file | | | [`sse-transport.test.ts`](/packages/core/api/index#sse-transporttestts) | file | | | [`provider-hooks.test.ts`](/packages/core/api/index#provider-hookstestts) | file | | | [`registry.test.ts`](/packages/core/api/index#registrytestts) | file | | | [`error-hooks.test.ts`](/packages/core/api/index#error-hookstestts) | file | | | [`file-hooks.test.ts`](/packages/core/api/index#file-hookstestts) | file | | | [`hook-automation-e2e.test.ts`](/packages/core/api/index#hook-automation-e2etestts) | file | | | [`session-hooks.test.ts`](/packages/core/api/index#session-hookstestts) | file | | | [`task-hooks.test.ts`](/packages/core/api/index#task-hookstestts) | file | | | [`adaptive-validation.test.ts`](/packages/core/api/index#adaptive-validationtestts) | file | | | [`impact.test.ts`](/packages/core/api/index#impacttestts) | file | | | [`patterns.test.ts`](/packages/core/api/index#patternstestts) | file | | | [`prediction.test.ts`](/packages/core/api/index#predictiontestts) | file | | | [`retry.test.ts`](/packages/core/api/index#retrytestts) | file | | | [`chain-composition.ts`](/packages/core/api/index#chain-compositionts) | file | | | [`consolidate-rcasd.ts`](/packages/core/api/index#consolidate-rcasdts) | file | | | [`resume.ts`](/packages/core/api/index#resumets) | file | | | [`state-machine.ts`](/packages/core/api/index#state-machinets) | file | | | [`chain-store.test.ts`](/packages/core/api/index#chain-storetestts) | file | | | [`consolidate-rcasd.test.ts`](/packages/core/api/index#consolidate-rcasdtestts) | file | | | [`default-chain.test.ts`](/packages/core/api/index#default-chaintestts) | file | | | [`frontmatter.test.ts`](/packages/core/api/index#frontmattertestts) | file | | | [`lifecycle.test.ts`](/packages/core/api/index#lifecycletestts) | file | | | [`pipeline.integration.test.ts`](/packages/core/api/index#pipelineintegrationtestts) | file | | | [`rcasd-paths.test.ts`](/packages/core/api/index#rcasd-pathstestts) | file | | | [`resume-schema-contract.test.ts`](/packages/core/api/index#resume-schema-contracttestts) | file | | | [`stage-record-provenance.integration.test.ts`](/packages/core/api/index#stage-record-provenanceintegrationtestts) | file | | | [`tessera-engine.test.ts`](/packages/core/api/index#tessera-enginetestts) | file | | | [`embedding-queue.ts`](/packages/core/api/index#embedding-queuets) | file | | | [`embedding-worker.ts`](/packages/core/api/index#embedding-workerts) | file | | | [`auto-extract.test.ts`](/packages/core/api/index#auto-extracttestts) | file | | | [`brain-automation.test.ts`](/packages/core/api/index#brain-automationtestts) | file | | | [`brain-embedding.test.ts`](/packages/core/api/index#brain-embeddingtestts) | file | | | [`brain-links.test.ts`](/packages/core/api/index#brain-linkstestts) | file | | | [`brain-migration.test.ts`](/packages/core/api/index#brain-migrationtestts) | file | | | [`brain-retrieval.test.ts`](/packages/core/api/index#brain-retrievaltestts) | file | | | [`brain-search.test.ts`](/packages/core/api/index#brain-searchtestts) | file | | | [`claude-mem-migration.test.ts`](/packages/core/api/index#claude-mem-migrationtestts) | file | | | [`decisions.test.ts`](/packages/core/api/index#decisionstestts) | file | | | [`engine-compat.test.ts`](/packages/core/api/index#engine-compattestts) | file | | | [`memory-bridge.test.ts`](/packages/core/api/index#memory-bridgetestts) | file | | | [`pipeline-manifest-sqlite.test.ts`](/packages/core/api/index#pipeline-manifest-sqlitetestts) | file | | | [`session-memory.test.ts`](/packages/core/api/index#session-memorytestts) | file | | | [`model-provider-registry.test.ts`](/packages/core/api/index#model-provider-registrytestts) | file | | | [`provider-detection.test.ts`](/packages/core/api/index#provider-detectiontestts) | file | | | [`checksum.test.ts`](/packages/core/api/index#checksumtestts) | file | | | [`logger.test.ts`](/packages/core/api/index#loggertestts) | file | | | [`migration-failure.integration.test.ts`](/packages/core/api/index#migration-failureintegrationtestts) | file | | | [`migration.test.ts`](/packages/core/api/index#migrationtestts) | file | | | [`state.test.ts`](/packages/core/api/index#statetestts) | file | | | [`validate.test.ts`](/packages/core/api/index#validatetestts) | file | | | [`deps.test.ts`](/packages/core/api/index#depstestts) | file | | | [`nexus-e2e.test.ts`](/packages/core/api/index#nexus-e2etestts) | file | | | [`permissions.test.ts`](/packages/core/api/index#permissionstestts) | file | | | [`query.test.ts`](/packages/core/api/index#querytestts) | file | | | [`reconcile.test.ts`](/packages/core/api/index#reconciletestts) | file | | | [`registry.test.ts`](/packages/core/api/index#registrytestts) | file | | | [`transfer.test.ts`](/packages/core/api/index#transfertestts) | file | | | [`index.test.ts`](/packages/core/api/index#indextestts) | file | | | [`log-filter.test.ts`](/packages/core/api/index#log-filtertestts) | file | | | [`log-parser.test.ts`](/packages/core/api/index#log-parsertestts) | file | | | [`log-reader.test.ts`](/packages/core/api/index#log-readertestts) | file | | | [`autonomous-spec.test.ts`](/packages/core/api/index#autonomous-spectestts) | file | | | [`orchestration.test.ts`](/packages/core/api/index#orchestrationtestts) | file | | | [`protocol-validators.test.ts`](/packages/core/api/index#protocol-validatorstestts) | file | | | [`deps.test.ts`](/packages/core/api/index#depstestts) | file | | | [`phases.test.ts`](/packages/core/api/index#phasestestts) | file | | | [`artifacts.test.ts`](/packages/core/api/index#artifactstestts) | file | | | [`cancel-release.test.ts`](/packages/core/api/index#cancel-releasetestts) | file | | | [`changelog-writer.test.ts`](/packages/core/api/index#changelog-writertestts) | file | | | [`push-policy.test.ts`](/packages/core/api/index#push-policytestts) | file | | | [`release.test.ts`](/packages/core/api/index#releasetestts) | file | | | [`allocate.test.ts`](/packages/core/api/index#allocatetestts) | file | | | [`context-monitor.ts`](/packages/core/api/index#context-monitorts) | file | | | [`hitl-warnings.ts`](/packages/core/api/index#hitl-warningsts) | file | | | [`statusline-setup.ts`](/packages/core/api/index#statusline-setupts) | file | | | [`briefing-blocked.test.ts`](/packages/core/api/index#briefing-blockedtestts) | file | | | [`briefing.test.ts`](/packages/core/api/index#briefingtestts) | file | | | [`handoff-integration.test.ts`](/packages/core/api/index#handoff-integrationtestts) | file | | | [`handoff.test.ts`](/packages/core/api/index#handofftestts) | file | | | [`index.test.ts`](/packages/core/api/index#indextestts) | file | | | [`session-cleanup.test.ts`](/packages/core/api/index#session-cleanuptestts) | file | | | [`session-edge-cases.test.ts`](/packages/core/api/index#session-edge-casestestts) | file | | | [`session-find.test.ts`](/packages/core/api/index#session-findtestts) | file | | | [`session-grade.integration.test.ts`](/packages/core/api/index#session-gradeintegrationtestts) | file | | | [`session-grade.test.ts`](/packages/core/api/index#session-gradetestts) | file | | | [`session-memory-bridge.test.ts`](/packages/core/api/index#session-memory-bridgetestts) | file | | | [`sessions.test.ts`](/packages/core/api/index#sessionstestts) | file | | | [`routing-table.ts`](/packages/core/api/index#routing-tablets) | file | | | [`dynamic-skill-generator.ts`](/packages/core/api/index#dynamic-skill-generatorts) | file | | | [`discovery.test.ts`](/packages/core/api/index#discoverytestts) | file | | | [`dispatch.test.ts`](/packages/core/api/index#dispatchtestts) | file | | | [`dynamic-skill-generator.test.ts`](/packages/core/api/index#dynamic-skill-generatortestts) | file | | | [`manifests.test.ts`](/packages/core/api/index#manifeststestts) | file | | | [`precedence.test.ts`](/packages/core/api/index#precedencetestts) | file | | | [`routing-table.test.ts`](/packages/core/api/index#routing-tabletestts) | file | | | [`skill-paths.test.ts`](/packages/core/api/index#skill-pathstestts) | file | | | [`test-utility.test.ts`](/packages/core/api/index#test-utilitytestts) | file | | | [`token.test.ts`](/packages/core/api/index#tokentestts) | file | | | [`validation.test.ts`](/packages/core/api/index#validationtestts) | file | | | [`version.test.ts`](/packages/core/api/index#versiontestts) | file | | | [`subagent.test.ts`](/packages/core/api/index#subagenttestts) | file | | | [`spawn-tier.test.ts`](/packages/core/api/index#spawn-tiertestts) | file | | | [`adapter-registry.test.ts`](/packages/core/api/index#adapter-registrytestts) | file | | | [`stats.test.ts`](/packages/core/api/index#statstestts) | file | | | [`purge.test.ts`](/packages/core/api/index#purgetestts) | file | | | [`cache.ts`](/packages/core/api/index#cachets) | file | | | [`import-logging.ts`](/packages/core/api/index#import-loggingts) | file | | | [`import-sort.ts`](/packages/core/api/index#import-sortts) | file | | | [`lifecycle-store.ts`](/packages/core/api/index#lifecycle-storets) | file | | | [`insertProjectRegistrySchema`](/packages/core/api/index#insertprojectregistryschema) | variable | | | [`selectProjectRegistrySchema`](/packages/core/api/index#selectprojectregistryschema) | variable | | | [`insertNexusAuditLogSchema`](/packages/core/api/index#insertnexusauditlogschema) | variable | | | [`selectNexusAuditLogSchema`](/packages/core/api/index#selectnexusauditlogschema) | variable | | | [`insertNexusSchemaMetaSchema`](/packages/core/api/index#insertnexusschemametaschema) | variable | | | [`selectNexusSchemaMetaSchema`](/packages/core/api/index#selectnexusschemametaschema) | variable | | | [`nexus-validation-schemas.ts`](/packages/core/api/index#nexus-validation-schemasts) | file | | | [`schema.ts`](/packages/core/api/index#schemats) | file | | | [`atomic.test.ts`](/packages/core/api/index#atomictestts) | file | | | [`backup.test.ts`](/packages/core/api/index#backuptestts) | file | | | [`brain-accessor-pageindex.test.ts`](/packages/core/api/index#brain-accessor-pageindextestts) | file | | | [`brain-accessor.test.ts`](/packages/core/api/index#brain-accessortestts) | file | | | [`brain-pageindex.test.ts`](/packages/core/api/index#brain-pageindextestts) | file | | | [`brain-schema.test.ts`](/packages/core/api/index#brain-schematestts) | file | | | [`brain-vec.test.ts`](/packages/core/api/index#brain-vectestts) | file | | | [`collision-detection.test.ts`](/packages/core/api/index#collision-detectiontestts) | file | | | [`data-safety-central.test.ts`](/packages/core/api/index#data-safety-centraltestts) | file | | | [`db-helpers.test.ts`](/packages/core/api/index#db-helperstestts) | file | | | [`e2e-safety-integration.test.ts`](/packages/core/api/index#e2e-safety-integrationtestts) | file | | | [`git-checkpoint.test.ts`](/packages/core/api/index#git-checkpointtestts) | file | | | [`idempotent-migration.test.ts`](/packages/core/api/index#idempotent-migrationtestts) | file | | | [`import-logging.test.ts`](/packages/core/api/index#import-loggingtestts) | file | | | [`import-sort.test.ts`](/packages/core/api/index#import-sorttestts) | file | | | [`json.test.ts`](/packages/core/api/index#jsontestts) | file | | | [`lifecycle-schema-parity.test.ts`](/packages/core/api/index#lifecycle-schema-paritytestts) | file | | | [`migration-integration.test.ts`](/packages/core/api/index#migration-integrationtestts) | file | | | [`migration-retry.test.ts`](/packages/core/api/index#migration-retrytestts) | file | | | [`migration-safety.test.ts`](/packages/core/api/index#migration-safetytestts) | file | | | [`migration-sqlite.test.ts`](/packages/core/api/index#migration-sqlitetestts) | file | | | [`performance-safety.test.ts`](/packages/core/api/index#performance-safetytestts) | file | | | [`project-detect.test.ts`](/packages/core/api/index#project-detecttestts) | file | | | [`project-registry.test.ts`](/packages/core/api/index#project-registrytestts) | file | | | [`provider.test.ts`](/packages/core/api/index#providertestts) | file | | | [`relations.test.ts`](/packages/core/api/index#relationstestts) | file | | | [`safety-accessor.test.ts`](/packages/core/api/index#safety-accessortestts) | file | | | [`sequence-validation.test.ts`](/packages/core/api/index#sequence-validationtestts) | file | | | [`session-store.test.ts`](/packages/core/api/index#session-storetestts) | file | | | [`sqlite-backup.test.ts`](/packages/core/api/index#sqlite-backuptestts) | file | | | [`sqlite.test.ts`](/packages/core/api/index#sqlitetestts) | file | | | [`task-store.test.ts`](/packages/core/api/index#task-storetestts) | file | | | [`write-verification.test.ts`](/packages/core/api/index#write-verificationtestts) | file | | | [`cleanup.test.ts`](/packages/core/api/index#cleanuptestts) | file | | | [`health.test.ts`](/packages/core/api/index#healthtestts) | file | | | [`start-deps.test.ts`](/packages/core/api/index#start-depstestts) | file | | | [`ATOMICITY_CRITERIA`](/packages/core/api/index#atomicitycriteria) | variable | | | [`atomicity.ts`](/packages/core/api/index#atomicityts) | file | | | [`crossref-extract.ts`](/packages/core/api/index#crossref-extractts) | file | | | [`delete-preview.ts`](/packages/core/api/index#delete-previewts) | file | | | [`VALID_STRATEGIES`](/packages/core/api/index#validstrategies) | variable | | | [`deletion-strategy.ts`](/packages/core/api/index#deletion-strategyts) | file | | | [`graph-cache.ts`](/packages/core/api/index#graph-cachets) | file | | | [`graph-rag.ts`](/packages/core/api/index#graph-ragts) | file | | | [`phase-tracking.ts`](/packages/core/api/index#phase-trackingts) | file | | | [`size-weighting.ts`](/packages/core/api/index#size-weightingts) | file | | | [`DEFAULT_THRESHOLDS`](/packages/core/api/index#defaultthresholds) | variable | Default thresholds. | | [`staleness.ts`](/packages/core/api/index#stalenessts) | file | | | [`add.test.ts`](/packages/core/api/index#addtestts) | file | | | [`archive.test.ts`](/packages/core/api/index#archivetestts) | file | | | [`assignee.test.ts`](/packages/core/api/index#assigneetestts) | file | | | [`atomicity.test.ts`](/packages/core/api/index#atomicitytestts) | file | | | [`cancel-ops.test.ts`](/packages/core/api/index#cancel-opstestts) | file | | | [`complete-unblocks.test.ts`](/packages/core/api/index#complete-unblockstestts) | file | | | [`complete.test.ts`](/packages/core/api/index#completetestts) | file | | | [`delete.test.ts`](/packages/core/api/index#deletetestts) | file | | | [`dependency-check.test.ts`](/packages/core/api/index#dependency-checktestts) | file | | | [`deps-ready.test.ts`](/packages/core/api/index#deps-readytestts) | file | | | [`epic-enforcement.test.ts`](/packages/core/api/index#epic-enforcementtestts) | file | | | [`find.test.ts`](/packages/core/api/index#findtestts) | file | | | [`graph-ops.test.ts`](/packages/core/api/index#graph-opstestts) | file | | | [`hierarchy-policy.test.ts`](/packages/core/api/index#hierarchy-policytestts) | file | | | [`hierarchy.test.ts`](/packages/core/api/index#hierarchytestts) | file | | | [`id-generator.test.ts`](/packages/core/api/index#id-generatortestts) | file | | | [`labels.test.ts`](/packages/core/api/index#labelstestts) | file | | | [`list.test.ts`](/packages/core/api/index#listtestts) | file | | | [`minimal-test.test.ts`](/packages/core/api/index#minimal-testtestts) | file | | | [`phase-tracking.test.ts`](/packages/core/api/index#phase-trackingtestts) | file | | | [`pipeline-stage.test.ts`](/packages/core/api/index#pipeline-stagetestts) | file | | | [`plan-priority.test.ts`](/packages/core/api/index#plan-prioritytestts) | file | | | [`priority-normalization.test.ts`](/packages/core/api/index#priority-normalizationtestts) | file | | | [`relates.test.ts`](/packages/core/api/index#relatestestts) | file | | | [`show-deps.test.ts`](/packages/core/api/index#show-depstestts) | file | | | [`show.test.ts`](/packages/core/api/index#showtestts) | file | | | [`staleness.test.ts`](/packages/core/api/index#stalenesstestts) | file | | | [`task-ops-depends.test.ts`](/packages/core/api/index#task-ops-dependstestts) | file | | | [`update.test.ts`](/packages/core/api/index#updatetestts) | file | | | [`chain-validation.test.ts`](/packages/core/api/index#chain-validationtestts) | file | | | [`compliance.test.ts`](/packages/core/api/index#compliancetestts) | file | | | [`docs-sync.test.ts`](/packages/core/api/index#docs-synctestts) | file | | | [`doctor-gitignore.test.ts`](/packages/core/api/index#doctor-gitignoretestts) | file | | | [`doctor-injection.test.ts`](/packages/core/api/index#doctor-injectiontestts) | file | | | [`doctor.test.ts`](/packages/core/api/index#doctortestts) | file | | | [`engine.test.ts`](/packages/core/api/index#enginetestts) | file | | | [`manifest.test.ts`](/packages/core/api/index#manifesttestts) | file | | | [`protocol-common.test.ts`](/packages/core/api/index#protocol-commontestts) | file | | | [`verification.test.ts`](/packages/core/api/index#verificationtestts) | file | |